GENSCAN 1.0	Date run:  2-Nov-116	Time: 19:00:27

Sequence gi568815597f:19782514_20007743 : 225230 bp : 44.64% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 Intr -   2990   2893   98  1  2   51   97    85 0.388   5.35
 1.05 Intr -   4604   4513   92  2  2  111  106     7 0.455   3.59
 1.04 Intr -   9197   9018  180  2  0   46   66    98 0.105   3.46
 1.03 Intr -  13921  13805  117  1  0   67   92    23 0.616   1.26
 1.02 Intr -  14867  14790   78  2  0  122   84    10 0.702   3.75
 1.01 Init -  17664  17599   66  0  0   36   59   124 0.748   3.38
 1.00 Prom -  22062  22023   40                              -2.36

 2.03 PlyA -  23487  23482    6                               1.05
 2.02 Term -  32708  31905  804  2  0   -5   48   888 0.260  68.73
 2.01 Init -  43498  43460   39  1  0   64   92    59 0.446   4.09
 2.00 Prom -  44921  44882   40                              -3.46

 3.00 Prom +  58020  58059   40                              -2.66
 3.01 Init +  62645  62705   61  1  1   93   76    11 0.415   1.81
 3.02 Intr +  77979  78053   75  1  0   83   89    44 0.204   3.49
 3.03 Term +  89892  90028  137  1  2   77   42   153 0.445   7.78
 3.04 PlyA +  92336  92341    6                               1.05

 4.00 Prom +  94069  94108   40                              -5.86
 4.01 Init + 100001 100221  221  1  2   65   76   454 0.754  40.00
 4.02 Intr + 107872 108020  149  1  2   68   78    96 0.691   6.48
 4.03 Intr + 111855 111967  113  1  2   71   96    66 0.993   5.80
 4.04 Intr + 115027 115149  123  0  0  108   76   185 0.983  20.08
 4.05 Intr + 121760 121885  126  1  0   73   13   122 0.596   4.08
 4.06 Intr + 122378 122474   97  1  1   70   92    81 0.987   6.28
 4.07 Intr + 123919 124103  185  2  2   36   95    83 0.904   3.31
 4.08 Term + 125057 125233  177  1  0  108   41   230 0.950  17.99
 4.09 PlyA + 127899 127904    6                               1.05

 5.05 PlyA - 128139 128134    6                               1.05
 5.04 Term - 137936 137794  143  0  2   72   54   240 0.986  17.09
 5.03 Intr - 139891 139785  107  0  2   68   78   136 0.850  10.46
 5.02 Intr - 140242 140104  139  2  1  142   81   288 0.999  33.02
 5.01 Init - 141046 141007   40  1  1   41  106    50 0.886   0.67
 5.00 Prom - 141966 141927   40                              -6.66

 6.00 Prom + 142063 142102   40                              -5.46
 6.01 Init + 142839 142897   59  2  2   39  105     2 0.772  -2.22
 6.02 Term + 143889 144090  202  0  1   59   50   383 0.831  28.46
 6.03 PlyA + 145561 145566    6                               1.05

 7.13 PlyA - 146469 146464    6                               1.05
 7.12 Term - 148380 148271  110  1  2   31   47    98 0.646  -1.33
 7.11 Intr - 150591 150501   91  0  1   48  101   171 0.716  13.97
 7.10 Intr - 152902 152834   69  1  0   63   80    52 0.321   1.28
 7.09 Intr - 169956 169866   91  2  1   74   89    53 0.293   4.00
 7.08 Intr - 171765 171593  173  0  2   50   21   111 0.062  -0.66
 7.07 Intr - 191913 191795  119  1  2   87   75    13 0.249   0.08
 7.06 Intr - 192468 192427   42  1  0   92   81    23 0.334   0.21
 7.05 Intr - 195608 195502  107  1  2   39   83    87 0.739   3.16
 7.04 Intr - 196011 195867  145  1  1   87   85   151 0.982  14.04
 7.03 Intr - 199400 199369   32  1  2  118   41    12 0.091  -2.73
 7.02 Intr - 201376 201183  194  1  2  -12   81   150 0.219   2.59
 7.01 Init - 202097 201936  162  2  0   88   80   149 0.628  11.88
 7.00 Prom - 202615 202576   40                              -3.06

 8.02 PlyA - 202704 202699    6                               1.05
 8.01 Sngl - 210580 210065  516  1  0   21   43   209 0.496   5.74
 8.00 Prom - 210715 210676   40                              -4.96

 9.00 Prom + 216088 216127   40                              -2.26
 9.01 Sngl + 223119 223574  456  2  0   61   41   162 0.628   4.99
 9.02 PlyA + 223685 223690    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 215561 215818  258  1  0   72   53   165 0.886   6.53


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:19782514_20007743|GENSCAN_predicted_peptide_1|211_aa
MWRRGLAGHLQRPAPLSRWVVEVTSSHSSHFSPSQTCTPNAQATRLLLGDRHISNRPLCP
RRGGGAQTKSLELQSWQAPHSLDKSREGTEVLLVLTEGAFSRRRNPALSWNQCNFSDTLE
IQFYFGLDPDPKSDQGVEAPKNQYTQQGNLHISPKNHPEPEQPVFRQREAHGCFLKSGKY
FLNAYSDPGPVQKARGVAVKKQPGNCLVHTX

>gi568815597f:19782514_20007743|GENSCAN_predicted_CDS_1|633_bp
atgtggcgccgcgggcttgccggtcacctgcagaggccggcacccctgtcgcgatgggtg
gtggaggtaacatcttctcattcttcacattttagccctagccagacttgtactccaaat
gcccaggccacaagacttctactgggagacagacacattagcaaccggccattatgtcca
aggagaggtggaggggcccagacgaagtctttggagcttcagagttggcaggccccacat
tcgctggacaaatccagggagggcacagaggtactgctggtcctgacagaaggggctttt
tctcgtcgcaggaatccagcactctcttggaatcagtgtaacttctcagacacacttgag
atccagttttattttggactggatcctgatcccaaatcagatcaaggggtggaggccccc
aagaaccagtatacacagcagggcaatttgcatatttctccaaagaaccatccagaacct
gagcagcctgtcttcagacagagagaggcccacggctgtttcttgaaatctggcaagtat
ttcctgaatgcctacagtgatccaggtcctgtccagaaagctcggggtgtggcagtgaaa
aaacaaccagggaactgcctcgtacacacagnn

>gi568815597f:19782514_20007743|GENSCAN_predicted_peptide_2|280_aa
MSEKSAKDQDKVQAPGQSEKEGQIPSKSQRRQLTLSANAQVLSDSVPPVPVPRMACTKTL
QQSQPISAGATTTTTAVAPAGGHSGSTECDLECLVCREPYSCPRLPKLLACQHAFCAICL
KLLLCVQDNTWSITCPLCRKVTAVPGGLICSLRDHEAVVGQLAQPCTEVSLCPQGLVDPA
DLAAGHPSLVGEDGQDEVSANHVAARRLAAHLLLLALLIILIGPFIYPGVLRWVLTFIIA
LALLMSTLFCCLPSTRGSCWPSSRTLFCREQKHSHISSIA

>gi568815597f:19782514_20007743|GENSCAN_predicted_CDS_2|843_bp
atgagcgagaagtcagcaaaagaccaggacaaagtccaggcacctggccagagtgaaaag
gaggggcagattccatccaagtcccagcggcgccagctgacactctctgccaatgcccag
gtgctgagcgacagtgtcccaccggtccctgtgcccagaatggcctgcaccaagaccctg
caacagtcccagcccatctccgcaggagccaccacaaccaccaccgctgtggcccctgct
gggggtcattctggctccacagaatgtgacctggagtgtctggtgtgccgggagccctac
agctgtccccggttgcccaagctgctggcctgccagcatgccttctgcgccatctgcctg
aagctcctgctgtgcgtgcaggacaacacctggtccatcacctgcccgctgtgccgcaag
gtcaccgccgtccccgggggcctcatctgcagcctgcgcgaccatgaggcggtggtgggg
cagctggcccagccatgcacagaggtatcgctctgtcctcaggggctggtggatcctgct
gacttggcagcaggacaccccagcttggtgggagaggatggacaggatgaagtaagtgca
aaccacgtggcagcccggcgcctggccgcgcacctactcctgctggccttgctcattatc
ctcatcgggcccttcatctacccgggtgtcttacgatgggtgctcaccttcatcatcgcc
ctggccctgctgatgtccaccctcttctgctgtctccccagcacccggggcagctgctgg
ccctcctccaggactctcttctgcagagagcagaaacacagccacatctcttccattgcc
tga

>gi568815597f:19782514_20007743|GENSCAN_predicted_peptide_3|90_aa
MTERGGKKDTMFSKCDTEFKEKRREQQWEELAPFMAIWVVEQVSPGWGPGTGADDAVVNN
EFTQDDDDCKYCGPLGSLAQTPNKDIAMEL

>gi568815597f:19782514_20007743|GENSCAN_predicted_CDS_3|273_bp
atgactgaaaggggaggaaagaaagacacaatgttttccaaatgtgatacagaattcaag
gaaaagagaagagagcaacagtgggaagaacttgctccattcatggccatctgggtggtg
gagcaggtgtctccagggtggggtcctggcacaggtgctgatgatgcagttgtaaataat
gagtttacacaggatgacgatgactgcaaatactgtgggccattaggatctctggcacag
acaccaaacaaagacattgctatggagctgtaa

>gi568815597f:19782514_20007743|GENSCAN_predicted_peptide_4|396_aa
MSRKQAAKSRPGSGSRKAEAERKRDERAARRALAKERRNRPESGGGGGCEEEFVSFANQL
QALGLKLREVPGDGNCLFRALGDQLEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPF
EKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYG
EHYDSVRRINDNSEAPAHLQTDMLHQDESNKREKIKTKGMDSEDDLRDEVEDAVQKVCNA
TGCSDFNLIVQNLEAENYNIESAIIAVLRMNQGKRNNAEENLEPSGRVLKQCGPLWEEGG
SGARIFGNQGLNEGRTENNKAQASPSEENKANKNQLAKVTNKQRREQQWMEKKKRQEERH
RHKALESRGSHRDNNRSEAEANTQVTLVKTFAALNI

>gi568815597f:19782514_20007743|GENSCAN_predicted_CDS_4|1191_bp
atgtcccgaaagcaggcggcgaagagccggccgggcagcggcagccggaaagccgaggcc
gagcgcaagcgggacgagcgggcggcgcgccgggccctggccaaggagcggcggaatcgg
ccggagtctggcggcggcggcggctgcgaggaggagttcgtcagcttcgccaaccagctg
caggccctggggctgaagctgcgggaggtgccgggggacggcaattgcttgttcagagct
cttggtgatcaattggagggacactcacgaaatcatctcaagcacagacaggagacagtg
gactacatgataaagcagcgggaagattttgaaccctttgtagaagatgacattcctttt
gagaagcatgtggccagtttggcaaagcctggtacttttgctggcaatgatgcaattgta
gcctttgcaagaaatcatcagttgaatgtagtgattcatcaacttaatgcccctttgtgg
cagattcgtggtacagagaaaagcagcgtgagggagttacacatcgcatatcggtatgga
gagcactacgacagtgttcggaggatcaatgacaactcagaggcacctgcacatctccag
acggatatgcttcatcaagatgaatcaaataaaagagaaaagatcaagacaaagggaatg
gactctgaagacgacctgagagatgaagtagaggatgctgtccagaaagtttgtaatgca
actggatgttcagattttaatttaatagtccagaacctggaagctgaaaattataatatt
gaatctgcaataattgccgtgcttcggatgaaccaagggaagagaaataatgcagaagag
aatcttgagcccagtggtcgagtgctgaagcagtgtggccctttgtgggaggagggtggc
agtggtgccagaatctttggaaatcagggcttaaatgaaggcaggaccgaaaacaataag
gcacaggccagccctagtgaagaaaacaaagcaaataaaaaccagctcgcaaaggtcaca
aacaaacagaggcgagaacagcagtggatggagaagaagaagcggcaggaggagaggcac
cgccacaaagccctggagagcagaggtagccacagggacaataacagaagcgaagcagag
gcgaacacgcaggtcaccttggtgaagaccttcgccgctctcaacatctga

>gi568815597f:19782514_20007743|GENSCAN_predicted_peptide_5|142_aa
MKSPHVLVFLCLLVALVTGNLVQFGVMIEKMTGKSALQYNDYGCYCGIGGSHWPVDQTDW
CCHAHDCCYGRLEKLGCEPKLEKYLFSVSERGIFCAGRTTCQRLTCECDKRAALCFRRNL
GTYNRKYAHYPNKLCTGPTPPC

>gi568815597f:19782514_20007743|GENSCAN_predicted_CDS_5|429_bp
atgaaatctccccacgtgctggtgttcctttgcctcctggtggctctggtcaccgggaac
ctggttcagtttggggtgatgatcgagaagatgacaggcaagtccgccctgcagtacaac
gactatggctgttactgcggcatcggtggctcccactggccggtggaccagactgactgg
tgctgccacgcccacgactgctgctacgggcgtctggagaagctgggctgtgagcccaaa
ctggaaaagtatcttttctctgtcagcgaacgtggcattttctgcgccggcaggaccacc
tgccagcggctgacctgcgagtgtgacaagagggctgccctctgctttcgccgcaacctg
ggcacctacaaccgcaaatatgcccattatcccaacaagctgtgcaccgggcccaccccg
ccctgctga

>gi568815597f:19782514_20007743|GENSCAN_predicted_peptide_6|86_aa
MLGSSHPVSEKTCGEKGSESLEATTIIIIIITISIIIVNITIITITIIVITINITIIITI
AITITIFITINIIYMVFICVPTQISH

>gi568815597f:19782514_20007743|GENSCAN_predicted_CDS_6|261_bp
atgctgggctcttctcaccctgtttcagagaagacttgcggggagaaggggtcagagagc
ttagaagccaccaccatcatcatcatcataatcactatcagtatcatcatcgtcaatatt
accatcatcaccatcaccatcattgtcatcaccatcaatattaccatcatcatcaccatt
gccatcaccatcaccatcttcatcaccatcaatatcatttatatggtttttatctgtgtc
cctacccaaatctcacattga

>gi568815597f:19782514_20007743|GENSCAN_predicted_peptide_7|444_aa
MPEPPLSAAVGSCAARASPTSAIPCSMAPSPIDHPRAEECGTQRSTCRQLHLRQVGSFTP
EPVRPRTHQKEETPNTSEHQKEQTPDTPPLRTVTLTVRDRGFILEVSETKNPPIPVTVCV
TTYHMMSFTSLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCC
VTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCGNSSSYWPAGRKQEGFRWEIPTWTSYS
PTCFSNNTHLGCWVWIPSQRHPAQGTQMVKEVDLRLSFHLLGCSTRLNPSSLAILVISVI
GFLFGEQQDLHQTPGVSVTEFLTVWQWFSNLSKHRNYTEPCKKYFQGPIPGVSNSAPCIW
TGIVTCFDQMDVAKVLLQDNDDDGGGDDDDDGGGVSGNDCDGDDSDSNVRQGPNEPYPDF
IACLKDAAQKAILDAHVRETIVQL

>gi568815597f:19782514_20007743|GENSCAN_predicted_CDS_7|1335_bp
atgcctgagcctcccctctccgccgccgtgggctcctgcgcggcccgagcctcccccacg
agcgccatcccctgctccatggcgcccagtcccattgaccacccaagggctgaggagtgt
ggcacacagcgcagcacttgcaggcagctccacctgcggcaggtcggcagcttcactcct
gagccagtgagaccacgaacccaccagaaggaagaaactccaaacacatctgaacatcag
aaggaacaaactccggacacgccgcctttaagaactgtaacactcactgtgagggaccgc
ggcttcattcttgaagtcagtgagaccaagaacccaccaattccggtcacagtatgtgtc
accacctatcacatgatgtcatttactagcctactgcaggcccatgggaatttggtgaat
ttccacagaatgatcaagttgacgacaggaaaggaagccgcactcagttatggcttctac
ggctgccactgtggcgtgggtggcagaggatcccccaaggatgcaacggatcgctgctgt
gtcactcatgactgttgctacaaacgtctggagaaacgtggatgtggcaccaaatttctg
agctacaagtttagcaactcggggagcagaatcacctgtggcaatagcagctcctactgg
cctgctgggagaaagcaggaagggttccgctgggaaattcccacctggaccagctacagc
cccacctgtttctccaataacacgcatctgggctgctgggtgtggatcccttcacaaagg
caccctgcacaggggacacagatggtcaaggaggtggatttgagactgagttttcatctc
cttggctgcagcacccgattaaatccttcttccttggcaatacttgtcatctcagtgatt
ggctttctgtttggcgagcagcaggacctacatcaaacccctggtgtttcagtaacagaa
tttctaacagtgtggcagtggttctccaacttgagcaagcatcggaattacacggagcct
tgtaaaaaatatttccagggcccaatccctggagtttctaattcagctccttgcatctgg
actggcattgtaacttgctttgatcaaatggatgtggcaaaagtgctgctgcaggataat
gatgatgatggtggtggtgatgatgatgatgatggtggtggtgttagtggtaatgattgt
gatggtgatgacagtgatagtaatgtcagacagggccctaatgaaccttacccagacttc
attgcctgcctaaaagatgcagctcaaaaggctatcttggacgcacatgtccgagagaca
attgtccaactatag

>gi568815597f:19782514_20007743|GENSCAN_predicted_peptide_8|171_aa
MRQKIKKDIQDLNAALDQEDLIDIYRTLHHKSRDYTFFSVPHSTYSKIDHIIGNKTLLSR
CKRIEIITVSLSDHSAIKLELRIKKLSQNCTTTWKLNNLLLNDYWVTNKIKAEITKFFET
SEKKETTYQNLWDTFKAVCKGKFVTLNAHIRKQETSKIGTLILQLKELEKQ

>gi568815597f:19782514_20007743|GENSCAN_predicted_CDS_8|516_bp
atgagacagaaaattaaaaaggacattcaggacttgaacgcagctctggaccaagaggac
ctaatagatatctacagaaccctccaccacaaatcaagagactatacgttcttctcagta
ccacatagcacttattctaaaatcgaccacataattggaaataaaacactcctcagcaga
tgcaaaagaatagaaatcataacagtcagcctctcagaccatagtgcaataaaattagaa
ctaaggattaagaaactcagtcaaaactgcacaactacatggaaactgaacaaccttctc
ctgaatgactactgggtaaccaacaaaattaaagcagaaataacgaagttctttgaaacc
agtgagaaaaaagagacaacataccagaatctctgggacacatttaaagcagtgtgtaaa
ggcaaatttgtaacactaaatgcccacatcagaaagcaggaaacatctaaaattggcacc
cttatattacaattaaaagaactagagaagcaatag

>gi568815597f:19782514_20007743|GENSCAN_predicted_peptide_9|151_aa
MNKFLDTYTLRRLIQEEVESLNRPITGSEIEAIMNSLPTKKSPGPDGFTAKFYQRYEEEL
VSFLLKQFQSIEKEAILPNAFYEASVILIPKPGRDTTKKENFRPMSLMNIDAKILNKILA
NKSSSTSKSLSTMIKLASCLGYKAGSTYTNQ

>gi568815597f:19782514_20007743|GENSCAN_predicted_CDS_9|456_bp
atgaataaattcctggacacatacaccctccgaagactaatccaggaggaagttgaatct
ctgaatagaccaataacaggctctgaaattgaggcaataatgaatagcctaccaaccaaa
aaaagtccaggaccagacggattcacagccaaattctaccagaggtatgaagaggagctg
gtatcattccttctgaagcaattccagtcaatagaaaaagaggcaatcctccctaatgca
ttttatgaggccagcgtcatcctgataccaaagcctggcagagacacaacaaaaaaagag
aattttagaccaatgtccctgatgaacattgatgcaaaaatccttaataaaatactggca
aacaaatccagcagcacatctaaaagcttatccaccatgatcaagttggcttcatgcctg
ggatacaaggctggttcaacatacacaaatcaataa