GENSCAN 1.0	Date run:  2-Nov-116	Time: 18:56:54

Sequence gi568815580f:58222440_58496266 : 273827 bp : 43.80% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   4860   5010  151  2  1   61  105    57 0.535   4.92
 1.02 Term +   5716   5831  116  2  2   53   44   105 0.796   1.33
 1.03 PlyA +   8123   8128    6                               1.05

 2.00 Prom +  11002  11041   40                              -2.46
 2.01 Init +  33202  34335 1134  0  0  115  127  1054 0.996 106.09
 2.02 Intr +  34447  34505   59  0  2   65   58    28 0.876  -4.82
 2.03 Term +  35230  35305   76  1  1   97   40   124 0.966   5.81
 2.04 PlyA +  36082  36087    6                               1.05

 3.00 Prom +  42489  42528   40                              -2.46
 3.01 Init +  50675  50704   30  1  0   65   89    36 0.012   1.16
 3.02 Intr +  93543  93593   51  2  0  100  107    59 0.664   8.10
 3.03 Intr +  99986 100047   62  1  2  121  100    32 0.696   5.23
 3.04 Intr + 100793 100895  103  2  1   68   94    86 0.974   7.38
 3.05 Intr + 102557 102723  167  1  2   96   76    48 0.955   3.16
 3.06 Intr + 106556 106688  133  2  1   74   80   252 0.862  23.65
 3.07 Intr + 108299 108475  177  1  0   39   87    94 0.809   4.52
 3.08 Intr + 111379 111453   75  0  0  122   48    13 0.516   0.41
 3.09 Intr + 117886 117970   85  0  1   48   29    71 0.262  -3.41
 3.10 Intr + 118642 118730   89  2  2   64   96    57 0.485   3.79
 3.11 Intr + 119239 119358  120  0  0   54   78    57 0.779   1.99
 3.12 Intr + 120467 120664  198  1  0   80   82    92 0.910   7.35
 3.13 Intr + 141829 141894   66  0  0   66   76    46 0.137   0.30
 3.14 Intr + 143560 143789  230  0  2   84  113   201 0.970  18.87
 3.15 Intr + 145307 145428  122  2  2   71  115    87 0.999   9.84
 3.16 Intr + 147958 148028   71  2  2   88  103    43 0.633   4.70
 3.17 Intr + 150735 150830   96  2  0   87   88   113 0.983  11.41
 3.18 Term + 152319 152552  234  2  0   77   54   110 0.864   2.82
 3.19 PlyA + 153791 153796    6                               1.05

 4.03 PlyA - 154024 154019    6                               1.05
 4.02 Term - 156874 156445  430  0  1  101   42   207 0.527  12.17
 4.01 Init - 158454 158447    8  0  2   55   95     0 0.728  -2.20
 4.00 Prom - 158528 158489   40                              -7.06

 5.00 Prom + 158621 158660   40                              -5.16
 5.01 Init + 162938 163032   95  1  2   81   47    55 0.871  -0.83
 5.02 Intr + 163087 163147   61  1  1  107   99    84 0.957  10.14
 5.03 Intr + 165000 165059   60  2  0  108   68    50 0.938   3.93
 5.04 Intr + 166646 166753  108  1  0   63   88    98 0.994   7.78
 5.05 Intr + 168207 168303   97  2  1   97   89   114 0.999  11.98
 5.06 Intr + 169048 169120   73  2  1  104  101    19 0.996   3.26
 5.07 Intr + 173728 173821   94  1  1  113   -3   181 0.106  11.47
 5.08 Intr + 187512 187648  137  2  2  107   77   128 0.985  12.97
 5.09 Intr + 189775 189799   25  1  1   97  102   -13 0.288  -0.97
 5.10 Intr + 198348 198417   70  2  1   60  103    52 0.160   2.65
 5.11 Term + 226870 226979  110  2  2  114   43    68 0.507   3.57
 5.12 PlyA + 228810 228815    6                               1.05

 6.04 PlyA - 232406 232401    6                               1.05
 6.03 Term - 232849 232747  103  0  1  121   52    62 0.311   3.65
 6.02 Intr - 238658 238519  140  2  2   -9  103   104 0.173   1.46
 6.01 Init - 244042 243911  132  1  0   60   97   136 0.382   9.85
 6.00 Prom - 255474 255435   40                              -3.76

 7.03 PlyA - 259429 259424    6                               1.05
 7.02 Term - 263511 263403  109  2  1   80   47    95 0.796   2.58
 7.01 Init - 264576 264518   59  0  2   95   98    12 0.373   3.71

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 173728 173830  103  1  1  113   47   183 0.863  14.45


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580f:58222440_58496266|GENSCAN_predicted_peptide_1|88_aa
MGEKSRPRRLRRVCVRESPGSLPGGVLKDLLIVILVSVEAVVSSELSVFGDPLCDWNVMH
TSDQGMALFARSFQTNSRNGHISKQLRY

>gi568815580f:58222440_58496266|GENSCAN_predicted_CDS_1|267_bp
atgggagaaaaaagcagaccccggagacttaggagggtctgtgtgagggagtctccaggc
agtcttcctgggggtgtcctgaaggacctcctgatcgtgattttggtcagtgtggaggct
gtggtttcttctgagctgtcagtatttggagacccactgtgtgactggaatgtgatgcac
acaagtgaccaaggcatggccctgttcgcaaggagcttccagaccaatagcagaaatgga
cacataagtaaacaactgcgctactga

>gi568815580f:58222440_58496266|GENSCAN_predicted_peptide_2|422_aa
MAHRLRFHFGSGRSNTAPESDILDQEREDDFFMAFHTLPRRSSPHPFAQNGGEDGGGGLQ
GGVGALKRSSSMFIPQLLTSIDARPTCSSSVQISLQRKATDGATDGCGPPEGADDGPPCA
TPDPRDQASATATTRASPQSGSREPSPRDTPGSSPPRAARDPGLQVNGTCGRRVRCSGPV
DCAEEAAPGLRIQHRASSADVRQVRLLPLGPDGQGGPAAAEPRRWSLQHVPDASGSSGKR
CFVFQLQQPQQGASGPGSDLNFGFTGTKGDRLVRYPRIRLERSTSYPTQPRSERGSPTED
RGALEASPRAGRMAPEIRRTNSAERTPQGQGCTFKIRQDQNAGQQHFRILVTRGPEEAPQ
NPEEKSAKSPVSTGADTTASGSECLAEFWHDDLWSSVCEMEYRETAARSIDQAYDDSAAF
VV

>gi568815580f:58222440_58496266|GENSCAN_predicted_CDS_2|1269_bp
atggcccatcggcttcggtttcattttggctctggtcgcagcaacacagcccccgaatca
gacatcctagaccaggagagagaagacgacttcttcatggcattccacaccctaccgcgg
agaagcagcccgcaccccttcgcccagaacggaggggaggacggcggcggaggcctgcag
ggaggcgtgggtgcgcttaagcggagctcgtccatgttcatcccgcagctcttgaccagc
atcgacgcccgccccacgtgcagctcctccgtgcagatctccctgcagcgcaaggccacg
gacggggccacggacgggtgcgggccgcccgagggcgccgacgatgggcctccatgcgca
acgcccgaccccagggaccaggcctccgccactgccaccacgagggcctcgccccagagt
ggctcccgggagccctcgccgagggacacccccgggagctcccctccgagggcagcccgg
gacccagggctccaggtcaacggcacgtgcggccgccgcgtgcggtgctccggccccgtg
gactgcgcggaggaggctgccccgggcctgcgcatccagcaccgcgcctccagcgccgac
gtgcgccaggtgaggctgctgcccctgggccccgatggccagggcggcccggccgcggca
gagcccaggcgctggtccctgcagcacgttccagatgcttctggaagctctgggaagcgg
tgttttgtcttccagttgcagcagccccaacaaggcgcttcggggccaggcagcgacctc
aactttggcttcacgggcacaaagggggacaggttggtgaggtatcctcgcattcggctg
gagaggagcacctcgtaccccacgcagccccgaagcgagcgagggagccccacggaagat
cggggagccctggaggcatcgcctcgagctggcaggatggctcctgaaatccgcaggacg
aactccgcggagaggactccgcagggccaggggtgcacatttaagatcaggcaggatcag
aacgcggggcagcagcattttagaattcttgtaacccgggggccggaagaagctccccag
aatcccgaggagaaaagcgccaaaagccctgtttccacgggagctgacaccacggccagt
ggatctgaatgtttggccgagttctggcacgatgatttgtggtccagtgtttgtgaaatg
gagtacagagagacagctgcacgctccatcgaccaggcatatgatgactctgcagctttc
gtggtttag

>gi568815580f:58222440_58496266|GENSCAN_predicted_peptide_3|702_aa
MLEDQKGIIQTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHKSRVKGFLRLK
MAYMPKNGGQDEENSDQRDDMEHGWEVVDSNDSASQHQEELPPPPLPPGWEEKVDNLGRT
YYVNHNNRTTQWHRPSLMDVSSESDNNIRQINQEAAHRRFRSRRHISEDLEPEPSEGGDV
PEPWETISEEVNIAGDSLGLALPPPPASPGSRTSPQELSEELSRRLQITPDSNGEQFSSL
IQREPSSRLRSCSVTDAVAEQGHLPPVSKPKNCQAVFTFKETHSYQQTWVHIAWGWEERK
DAKGRTYYVNHNNRTTTWTRPIMQLAEDGASGSATNSNNHLIEPQIRRPRSLSSPTVTLS
APLEGAKDSPVRRAVKDTLSNPQSPQPSPYNSPKPQHKVTQSFLPPGWEMRIAPNGRPFF
IDHNTKTTTWAVPYSREFKQKYDYFRKKLKKPADIPNRFEMKLHRNNIFEESYRRIMSVK
RPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNS
GLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNS
LKWILENDPTELDLMFCIDEENFGQSPGSACSSAGPVDAGVTLPAVLHPLLFCLTLAIWI
SSSYLWLRLHPSPLTTSLLSQAGVCLPASRIPRSNGLLNCFS

>gi568815580f:58222440_58496266|GENSCAN_predicted_CDS_3|2109_bp
atgctggaggatcagaaagggatcatccaaacacgagacgacttcctgggccaggtggac
gtgccccttagtcaccttccgacagaagatccaaccatggagcgaccctatacatttaag
gactttctcctcagaccaagaagtcataagtctcgagttaagggatttttgcgattgaaa
atggcctatatgccaaaaaatggaggtcaagatgaagaaaacagtgaccagagggatgac
atggagcatggatgggaagttgttgactcaaatgactcggcttctcagcaccaagaggaa
cttcctcctcctcctctgcctcccgggtgggaagaaaaagtggacaatttaggccgaact
tactatgtcaaccacaacaaccggaccactcagtggcacagaccaagcctgatggacgtg
tcctcggagtcggacaataacatcagacagatcaaccaggaggcagcacaccggcgcttc
cgctcccgcaggcacatcagcgaagacttggagcccgagccctcggagggcggggatgtc
cccgagccttgggagaccatttcagaggaagtgaatatcgctggagactctctcggtctg
gctctgcccccaccaccggcctccccaggatctcggaccagccctcaggagctgtcagag
gaactaagcagaaggcttcagatcactccagactccaatggggaacagttcagctctttg
attcaaagagaaccctcctcaaggttgaggtcatgcagtgtcaccgacgcagttgcagaa
cagggccatctaccaccggtctctaaacccaaaaactgccaagctgtgttcaccttcaaa
gaaacacactcctatcagcagacttgggtgcacatagcctggggctgggaagaaagaaaa
gatgctaaggggcgcacatactatgtcaatcataacaatcgaaccacaacttggactcga
cctatcatgcagcttgcagaagatggtgcgtccggatcagccacaaacagtaacaaccat
ctaatcgagcctcagatccgccggcctcgtagcctcagctcgccaacagtaactttatct
gccccgctggagggtgccaaggactcacccgtacgtcgggctgtgaaagacaccctttcc
aacccacagtccccacagccatcaccttacaactcccccaaaccacaacacaaagtcaca
cagagcttcttgccacccggctgggaaatgaggatagcgccaaacggccggcccttcttc
attgatcataacacaaagactacaacctgggctgtcccttactccagagaatttaagcag
aaatatgactacttcaggaagaaattaaagaaacctgctgatatccccaataggtttgaa
atgaaacttcacagaaataacatatttgaagagtcctatcggagaattatgtccgtgaaa
agaccagatgtcctaaaagctagactgtggattgagtttgaatcagagaaaggtcttgac
tatgggggtgtggccagagaatggttcttcttactgtccaaagagatgttcaacccctac
tacggcctctttgagtactctgccacggacaactacacccttcagatcaaccctaattca
ggcctctgtaatgaggatcatttgtcctacttcacttttattggaagagttgctggtctg
gccgtatttcatgggaagctcttagatggtttcttcattagaccattttacaagatgatg
ttgggaaagcagataaccctgaatgacatggaatctgtggatagtgaatattacaactct
ttgaaatggatcctggagaatgaccctactgagctggacctcatgttctgcatagacgaa
gaaaactttggacagtcccctggaagtgcatgctcctctgctggccctgtggatgcaggt
gtcaccctgccagctgtcctgcacccgctgcttttttgtctcacccttgctatctggatt
tcctcatcctacctgtggctccggctgcacccatctccgctcaccaccagcctcttatct
caggccggcgtctgccttccagcctccagaattcccaggtctaacggcctcctcaactgc
ttctcctga

>gi568815580f:58222440_58496266|GENSCAN_predicted_peptide_4|145_aa
MKRCCGSALAPVMRVDSIPEAEIQQSDQGETANCRWSWCWHPGALLPGEQSAEPALWGGF
LPPSATKRTPRPPRAFWAIALLCLGSWRTPHKEHNAQPQQALSKSSWENTAVEKFLFKST
GPSINLALFLTEIRGTSGGLPALAS

>gi568815580f:58222440_58496266|GENSCAN_predicted_CDS_4|438_bp
atgaaaaggtgctgcggcagcgccctggcccccgtcatgagggtggacagcatcccggag
gcagaaatccagcaaagtgaccaaggagaaacagcgaactgcagatggagctggtgctgg
cacccaggggccctgctccctggtgagcagtctgcagagcctgctctgtggggtggattc
ttgccaccttcagccacgaaacgcacaccccgccctcccagggctttctgggccatcgcc
ctcctgtgcctgggctcctggaggaccccacacaaggaacacaatgcccagccacagcag
gcgctcagcaagagctcgtgggagaacactgcagtagaaaaattcctctttaagtctact
ggccccagcataaacttggctctcttcctcacagagatcagaggaacttctgggggactc
cctgccttggccagttaa

>gi568815580f:58222440_58496266|GENSCAN_predicted_peptide_5|309_aa
MNKLNSGGTEETLPSALLSWMEEKHSLLRRKHLVIQWRFVNRVQKQMNAFLEGFTELLPI
DLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIR
LLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDL
REKLLMAVENAQGFEGFPVQFALVQPNSNIYILLQKPFKGLPVLTNENETKIYTPYEQGH
SSSVGLGASKRTSEVISKVESIRCGSTLSPELHDYSKPKANRAPMEKWRMLRYCYGALRS
EMGPSPCPG

>gi568815580f:58222440_58496266|GENSCAN_predicted_CDS_5|930_bp
atgaataaactaaacagtgggggcacagaggagaccctcccctctgctctgctgtcgtgg
atggaggagaagcactccctgttgcggagaaagcacttagtcatccagtggagatttgtg
aacagggtccagaagcagatgaacgccttcttggagggattcacagaactacttcctatt
gatttgattaaaatttttgatgaaaatgagctggagttgctcatgtgcggcctcggtgat
gtggatgtgaatgactggagacagcattctatttacaagaacggctactgcccaaaccac
cccgtcattcagtggttctggaaggctgtgctactcatggacgccgaaaagcgtatccgg
ttactgcagtttgtcacagggacatcgcgagtacctatgaatggatttgccgaactttat
ggttccaatggtcctcagctgtttacaatagagcaatggggcagtcctgagaaactgccc
agagctcacacatgctttaatcgccttgacttacctccatatgaaacctttgaagattta
cgagagaaacttctcatggccgtggaaaatgctcaaggatttgaagggttcccagtccag
tttgcactggtgcagcccaactccaatatctacattctcttgcagaaacccttcaaaggc
ttgcctgtattgaccaatgaaaatgaaactaaaatctacactccttatgagcaagggcat
tcaagctcagttgggctgggtgcttccaagagaacatcagaggtcatcagcaaggtggaa
tctattcgctgtggttcaactttgtctcccgaactgcatgattattcaaagccaaaagcc
aacagagcccccatggagaagtggaggatgctcagatactgctatggagccctgagaagt
gaaatgggtccaagcccttgcccaggatag

>gi568815580f:58222440_58496266|GENSCAN_predicted_peptide_6|124_aa
MWHWKRPRLSMVVGGAGGVWTSSPGHSMGLSSEAAMEVSPLSAQISKLEAYTGDTSSYAN
RKGIPGRHAYSTRKFPLPFSTMCAVSMVLVRNLDIKEKKADAPILLPLHKAWGLPPQIYT
ERLS

>gi568815580f:58222440_58496266|GENSCAN_predicted_CDS_6|375_bp
atgtggcactggaagaggcccaggctcagcatggtggtggggggggcgggtggcgtctgg
acatcgtctcctggacactccatgggcctgagcagtgaagctgccatggaagtatcaccc
ctcagtgcccagataagcaagctggaagcctacacaggtgacaccagcagctatgccaac
agaaaagggatacctggacgccacgcatattcaacacggaagtttcctcttccctttagc
accatgtgtgcagtcagtatggtgctggtcagaaacttggatatcaaagagaagaaagca
gatgcccccattctgctacctcttcacaaggcctgggggcttccgccacagatttacact
gagcggctttcctga

>gi568815580f:58222440_58496266|GENSCAN_predicted_peptide_7|55_aa
MAYSSRFNPQGSGWHMSHVRDQMLSEFEKPRGSPDANDRDLFPMCSDREAAPAHS

>gi568815580f:58222440_58496266|GENSCAN_predicted_CDS_7|168_bp
atggcctacagctccagattcaaccctcaaggcagcgggtggcacatgtcgcatgtaaga
gaccagatgttgtctgaatttgaaaagcctcgaggcagtcctgatgcaaatgaccgggac
ttgtttccaatgtgctcagacagggaagctgcccctgcccactcgtga