Result of FASTA (omim) for pF1KA0329
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0329, 1411 aa
  1>>>pF1KA0329 1411 - 1411 aa - 1411 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6402+/-0.000441; mu= 11.9696+/- 0.027
 mean_var=127.8550+/-25.863, 0's: 0 Z-trim(114.0): 49  B-trim: 363 in 2/51
 Lambda= 0.113427
 statistics sampled from 23574 (23623) to 23574 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.277), width:  16
 Scan time: 16.350

The best scores are:                                      opt bits E(85289)
NP_055659 (OMIM: 615000,615031) tectonin beta-prop (1411) 9568 1578.3       0
NP_001166102 (OMIM: 615000,615031) tectonin beta-p (1267) 8524 1407.4       0
NP_852608 (OMIM: 607521,614074) Hermansky-Pudlak s (1129)  384 75.4 2.8e-12
XP_016872638 (OMIM: 607521,614074) PREDICTED: Herm (1129)  384 75.4 2.8e-12
XP_016872639 (OMIM: 607521,614074) PREDICTED: Herm (1129)  384 75.4 2.8e-12
XP_011518166 (OMIM: 607521,614074) PREDICTED: Herm (1156)  384 75.4 2.8e-12
XP_011518164 (OMIM: 607521,614074) PREDICTED: Herm (1156)  384 75.4 2.8e-12
XP_011518165 (OMIM: 607521,614074) PREDICTED: Herm (1156)  384 75.4 2.8e-12
XP_016872641 (OMIM: 607521,614074) PREDICTED: Herm (1092)  360 71.4 4.1e-11
XP_016872642 (OMIM: 607521,614074) PREDICTED: Herm (1092)  360 71.4 4.1e-11
XP_011518167 (OMIM: 607521,614074) PREDICTED: Herm (1119)  360 71.5 4.2e-11
XP_016872640 (OMIM: 607521,614074) PREDICTED: Herm (1119)  360 71.5 4.2e-11
NP_852609 (OMIM: 607521,614074) Hermansky-Pudlak s (1015)  319 64.7   4e-09
NP_009147 (OMIM: 607521,614074) Hermansky-Pudlak s (1015)  319 64.7   4e-09
XP_016872643 (OMIM: 607521,614074) PREDICTED: Herm (1015)  319 64.7   4e-09
XP_011518170 (OMIM: 607521,614074) PREDICTED: Herm (1042)  319 64.7 4.1e-09
XP_011518169 (OMIM: 607521,614074) PREDICTED: Herm (1042)  319 64.7 4.1e-09
XP_011518168 (OMIM: 607521,614074) PREDICTED: Herm (1042)  319 64.7 4.1e-09
XP_016867427 (OMIM: 614781) PREDICTED: tectonin be ( 618)  242 52.0 1.6e-05
XP_005250310 (OMIM: 614781) PREDICTED: tectonin be (1165)  242 52.1 2.8e-05
NP_056210 (OMIM: 614781) tectonin beta-propeller r (1165)  242 52.1 2.8e-05
XP_016867426 (OMIM: 614781) PREDICTED: tectonin be (1131)  205 46.1  0.0018


>>NP_055659 (OMIM: 615000,615031) tectonin beta-propelle  (1411 aa)
 initn: 9568 init1: 9568 opt: 9568  Z-score: 8462.2  bits: 1578.3 E(85289):    0
Smith-Waterman score: 9568; 99.9% identity (100.0% similar) in 1411 aa overlap (1-1411:1-1411)

               10        20        30        40        50        60
pF1KA0 MASISEPVTFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MASISEPVTFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 CRHLNQMRKYNFEGKTESITVVKLLSCFDDLVAAGTASGRVAVFQLVSSLPGRNKQLRRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CRHLNQMRKYNFEGKTESITVVKLLSCFDDLVAAGTASGRVAVFQLVSSLPGRNKQLRRF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 DVTGIHKNSITALAWSPNGMKLFSGDDKGKIVYSSLDLDQGLCNSQLVLEEPSSIVQLDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DVTGIHKNSITALAWSPNGMKLFSGDDKGKIVYSSLDLDQGLCNSQLVLEEPSSIVQLDY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 SQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTLYASRPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTLYASRPGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 RLWKADVHGTVQATFILKDAFAGGVKPFELHPRLESPNSGSCSLPERHLGLVSCFFQEGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RLWKADVHGTVQATFILKDAFAGGVKPFELHPRLESPNSGSCSLPERHLGLVSCFFQEGW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 VLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIRISSRPEGLTS
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_055 VLSWNEYSIYLLDTVNQATVAGLEGSGDIVSVSCTENEIFFLKGDRNIIRISSRPEGLTS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 TVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSSSLNSTDSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSSSLNSTDSGS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 GLLPPGLQATPELGKGSQPLSQRFNAISSEDFDQELVVKPIKVKRKKKKKKTEGGSRSTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GLLPPGLQATPELGKGSQPLSQRFNAISSEDFDQELVVKPIKVKRKKKKKKTEGGSRSTC
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 HSSLESTPCSEFPGDSPQSLNTDLLSMTSSVLGSSVDQLSAESPDQESSFNGEVNGVPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HSSLESTPCSEFPGDSPQSLNTDLLSMTSSVLGSSVDQLSAESPDQESSFNGEVNGVPQE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 NTDPETFNVLEVSGSMPDSLAEEDDIRTEMPHCHHAHGRELLNGAREDVGGSDVTGLGDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NTDPETFNVLEVSGSMPDSLAEEDDIRTEMPHCHHAHGRELLNGAREDVGGSDVTGLGDE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 PCPADDGPNSTQLPFQEQDSSPGAHDGEDIQPIGPQSTFCEVPLLNSLTVPSSLSWAPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PCPADDGPNSTQLPFQEQDSSPGAHDGEDIQPIGPQSTFCEVPLLNSLTVPSSLSWAPSA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 EQWLPGTRADEGSPVEPSQEQDILTSMEASGHLSTNLWHAVTDDDTGQKEIPISERVLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EQWLPGTRADEGSPVEPSQEQDILTSMEASGHLSTNLWHAVTDDDTGQKEIPISERVLGS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 VGGQLTPVSALAASTHKPWLEQPPRDQTLTSSDEEDIYAHGLPSSSSETSVTELGPSCSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VGGQLTPVSALAASTHKPWLEQPPRDQTLTSSDEEDIYAHGLPSSSSETSVTELGPSCSQ
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 QDLSRLGAEDAGLLKPDQFAESWMGYSGPGYGILSLVVSEKYIWCLDYKGGLFCSALPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QDLSRLGAEDAGLLKPDQFAESWMGYSGPGYGILSLVVSEKYIWCLDYKGGLFCSALPGA
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 GLRWQKFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEALPQAVFVALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GLRWQKFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEALPQAVFVALS
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 DDTAWIIRTSGDLYLQTGLSVDRPCARAVKVDCPYPLSQITARNNVVWALTEQRALLYRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DDTAWIIRTSGDLYLQTGLSVDRPCARAVKVDCPYPLSQITARNNVVWALTEQRALLYRE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 GVSSFCPEGEQWKCDIVSERQALEPVCITLGDQQTLWALDIHGNLWFRTGIISKKPQGDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GVSSFCPEGEQWKCDIVSERQALEPVCITLGDQQTLWALDIHGNLWFRTGIISKKPQGDD
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 DHWWQVSITDYVVFDQCSLFQTIIHATHSVATAAQAPVEKVADKLRMAFWSQQLQCQPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DHWWQVSITDYVVFDQCSLFQTIIHATHSVATAAQAPVEKVADKLRMAFWSQQLQCQPSL
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 LGVNNSGVWISSGKNEFHVAKGSLIGTYWNHVVPRGTASATKWAFVLASAAPTKEGSFLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LGVNNSGVWISSGKNEFHVAKGSLIGTYWNHVVPRGTASATKWAFVLASAAPTKEGSFLW
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 LCQSSKDLCSVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQVFIRTLSKSCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LCQSSKDLCSVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQVFIRTLSKSCP
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 TGMHWTRLDLSQLGAVKLTSLACGNQHIWACDSRGGVYFRVGTQPLNPSLMLPAWIMIEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TGMHWTRLDLSQLGAVKLTSLACGNQHIWACDSRGGVYFRVGTQPLNPSLMLPAWIMIEP
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA0 PVQPAGVSLVSVHSSPNDQMLWVLDSRWNVHVRTGITEEMPVGTAWEHVPGLQACQLALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PVQPAGVSLVSVHSSPNDQMLWVLDSRWNVHVRTGITEEMPVGTAWEHVPGLQACQLALS
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA0 TRTVWARCPNGDLARRYGVTDKNPAGDYWKKIPGSVSCFTVTASDELWAVGPPGYLLQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TRTVWARCPNGDLARRYGVTDKNPAGDYWKKIPGSVSCFTVTASDELWAVGPPGYLLQRL
             1330      1340      1350      1360      1370      1380

             1390      1400      1410 
pF1KA0 TKTFSHSHGTQKSSQAAMPHPEDLEDEWEVI
       :::::::::::::::::::::::::::::::
NP_055 TKTFSHSHGTQKSSQAAMPHPEDLEDEWEVI
             1390      1400      1410 

>>NP_001166102 (OMIM: 615000,615031) tectonin beta-prope  (1267 aa)
 initn: 8524 init1: 8524 opt: 8524  Z-score: 7539.6  bits: 1407.4 E(85289):    0
Smith-Waterman score: 8524; 99.9% identity (100.0% similar) in 1263 aa overlap (1-1263:1-1263)

               10        20        30        40        50        60
pF1KA0 MASISEPVTFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASISEPVTFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 CRHLNQMRKYNFEGKTESITVVKLLSCFDDLVAAGTASGRVAVFQLVSSLPGRNKQLRRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRHLNQMRKYNFEGKTESITVVKLLSCFDDLVAAGTASGRVAVFQLVSSLPGRNKQLRRF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 DVTGIHKNSITALAWSPNGMKLFSGDDKGKIVYSSLDLDQGLCNSQLVLEEPSSIVQLDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVTGIHKNSITALAWSPNGMKLFSGDDKGKIVYSSLDLDQGLCNSQLVLEEPSSIVQLDY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 SQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTLYASRPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTLYASRPGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 RLWKADVHGTVQATFILKDAFAGGVKPFELHPRLESPNSGSCSLPERHLGLVSCFFQEGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLWKADVHGTVQATFILKDAFAGGVKPFELHPRLESPNSGSCSLPERHLGLVSCFFQEGW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 VLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIRISSRPEGLTS
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_001 VLSWNEYSIYLLDTVNQATVAGLEGSGDIVSVSCTENEIFFLKGDRNIIRISSRPEGLTS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 TVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSSSLNSTDSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSSSLNSTDSGS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 GLLPPGLQATPELGKGSQPLSQRFNAISSEDFDQELVVKPIKVKRKKKKKKTEGGSRSTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLLPPGLQATPELGKGSQPLSQRFNAISSEDFDQELVVKPIKVKRKKKKKKTEGGSRSTC
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 HSSLESTPCSEFPGDSPQSLNTDLLSMTSSVLGSSVDQLSAESPDQESSFNGEVNGVPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSSLESTPCSEFPGDSPQSLNTDLLSMTSSVLGSSVDQLSAESPDQESSFNGEVNGVPQE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 NTDPETFNVLEVSGSMPDSLAEEDDIRTEMPHCHHAHGRELLNGAREDVGGSDVTGLGDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTDPETFNVLEVSGSMPDSLAEEDDIRTEMPHCHHAHGRELLNGAREDVGGSDVTGLGDE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 PCPADDGPNSTQLPFQEQDSSPGAHDGEDIQPIGPQSTFCEVPLLNSLTVPSSLSWAPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCPADDGPNSTQLPFQEQDSSPGAHDGEDIQPIGPQSTFCEVPLLNSLTVPSSLSWAPSA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 EQWLPGTRADEGSPVEPSQEQDILTSMEASGHLSTNLWHAVTDDDTGQKEIPISERVLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQWLPGTRADEGSPVEPSQEQDILTSMEASGHLSTNLWHAVTDDDTGQKEIPISERVLGS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 VGGQLTPVSALAASTHKPWLEQPPRDQTLTSSDEEDIYAHGLPSSSSETSVTELGPSCSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGGQLTPVSALAASTHKPWLEQPPRDQTLTSSDEEDIYAHGLPSSSSETSVTELGPSCSQ
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 QDLSRLGAEDAGLLKPDQFAESWMGYSGPGYGILSLVVSEKYIWCLDYKGGLFCSALPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDLSRLGAEDAGLLKPDQFAESWMGYSGPGYGILSLVVSEKYIWCLDYKGGLFCSALPGA
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 GLRWQKFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEALPQAVFVALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLRWQKFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEALPQAVFVALS
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 DDTAWIIRTSGDLYLQTGLSVDRPCARAVKVDCPYPLSQITARNNVVWALTEQRALLYRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDTAWIIRTSGDLYLQTGLSVDRPCARAVKVDCPYPLSQITARNNVVWALTEQRALLYRE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 GVSSFCPEGEQWKCDIVSERQALEPVCITLGDQQTLWALDIHGNLWFRTGIISKKPQGDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVSSFCPEGEQWKCDIVSERQALEPVCITLGDQQTLWALDIHGNLWFRTGIISKKPQGDD
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 DHWWQVSITDYVVFDQCSLFQTIIHATHSVATAAQAPVEKVADKLRMAFWSQQLQCQPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DHWWQVSITDYVVFDQCSLFQTIIHATHSVATAAQAPVEKVADKLRMAFWSQQLQCQPSL
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 LGVNNSGVWISSGKNEFHVAKGSLIGTYWNHVVPRGTASATKWAFVLASAAPTKEGSFLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGVNNSGVWISSGKNEFHVAKGSLIGTYWNHVVPRGTASATKWAFVLASAAPTKEGSFLW
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 LCQSSKDLCSVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQVFIRTLSKSCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCQSSKDLCSVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQVFIRTLSKSCP
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 TGMHWTRLDLSQLGAVKLTSLACGNQHIWACDSRGGVYFRVGTQPLNPSLMLPAWIMIEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGMHWTRLDLSQLGAVKLTSLACGNQHIWACDSRGGVYFRVGTQPLNPSLMLPAWIMIEP
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA0 PVQPAGVSLVSVHSSPNDQMLWVLDSRWNVHVRTGITEEMPVGTAWEHVPGLQACQLALS
       :::                                                         
NP_001 PVQVSRS                                                     
                                                                   

>>NP_852608 (OMIM: 607521,614074) Hermansky-Pudlak syndr  (1129 aa)
 initn: 183 init1:  94 opt: 384  Z-score: 341.5  bits: 75.4 E(85289): 2.8e-12
Smith-Waterman score: 398; 29.6% identity (58.6% similar) in 345 aa overlap (39-366:38-369)

       10        20        30        40        50        60        
pF1KA0 TFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLYCRHLNQMR
                                     :.. ..  ..:.::: : :.:  ..  . :
NP_852 PESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQKEGWKHR
        10        20        30        40        50        60       

       70        80          90       100       110       120      
pF1KA0 KYNFEGKTESITVVKLLSCF--DDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGIH
          : .. :. .. ..  :.  :: ::..:..: :.:..: .   :. .:.    :.. :
NP_852 L--FLSHREG-AISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQMY---VSSEH
          70         80        90       100       110          120 

         130       140       150       160               170       
pF1KA0 KNS-ITALAWSPNGMKLFSGDDKGKIVYSSLDLDQG--------LCNSQLVLEEPSSIVQ
       :.  .::: :.   ...: ::  ::.   .:. ..         .   : .    : .::
NP_852 KGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQ
             130       140       150       160       170       180 

       180       190       200       210       220       230       
pF1KA0 LDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTL-YAS
       ::: .  ::.:.: ::.:  ::...  .::.. :   :..::::.:: :. ..  : : .
NP_852 LDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERD--GEYGACFFPGRCSGGQQPLIYCA
             190       200       210         220       230         

        240       250       260          270       280       290   
pF1KA0 RPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLESPNSGSCSLPERHLGLVS
       ::: :.:...  : : .:  .:  ..    :   .. .:. .   ..: ::   .:  .:
NP_852 RPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLS
     240       250       260       270       280       290         

           300       310       320       330       340       350   
pF1KA0 CFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIRIS-
           :  ::.:.: .::..   :  ..   :   :: .:.  .::.: :. . .. ..: 
NP_852 ----EHCVLTWTERGIYIFIPQNVQVLLWSE-VKDIQDVAVCRNELFCLHLNGKVSHLSL
         300       310       320        330       340       350    

             360       370       380       390       400       410 
pF1KA0 -SRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSS
        :  . .   .: ::                                             
NP_852 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
          360       370       380       390       400       410    

>>XP_016872638 (OMIM: 607521,614074) PREDICTED: Hermansk  (1129 aa)
 initn: 183 init1:  94 opt: 384  Z-score: 341.5  bits: 75.4 E(85289): 2.8e-12
Smith-Waterman score: 398; 29.6% identity (58.6% similar) in 345 aa overlap (39-366:38-369)

       10        20        30        40        50        60        
pF1KA0 TFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLYCRHLNQMR
                                     :.. ..  ..:.::: : :.:  ..  . :
XP_016 PESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQKEGWKHR
        10        20        30        40        50        60       

       70        80          90       100       110       120      
pF1KA0 KYNFEGKTESITVVKLLSCF--DDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGIH
          : .. :. .. ..  :.  :: ::..:..: :.:..: .   :. .:.    :.. :
XP_016 L--FLSHREG-AISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQMY---VSSEH
          70         80        90       100       110          120 

         130       140       150       160               170       
pF1KA0 KNS-ITALAWSPNGMKLFSGDDKGKIVYSSLDLDQG--------LCNSQLVLEEPSSIVQ
       :.  .::: :.   ...: ::  ::.   .:. ..         .   : .    : .::
XP_016 KGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQ
             130       140       150       160       170       180 

       180       190       200       210       220       230       
pF1KA0 LDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTL-YAS
       ::: .  ::.:.: ::.:  ::...  .::.. :   :..::::.:: :. ..  : : .
XP_016 LDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERD--GEYGACFFPGRCSGGQQPLIYCA
             190       200       210         220       230         

        240       250       260          270       280       290   
pF1KA0 RPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLESPNSGSCSLPERHLGLVS
       ::: :.:...  : : .:  .:  ..    :   .. .:. .   ..: ::   .:  .:
XP_016 RPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLS
     240       250       260       270       280       290         

           300       310       320       330       340       350   
pF1KA0 CFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIRIS-
           :  ::.:.: .::..   :  ..   :   :: .:.  .::.: :. . .. ..: 
XP_016 ----EHCVLTWTERGIYIFIPQNVQVLLWSE-VKDIQDVAVCRNELFCLHLNGKVSHLSL
         300       310       320        330       340       350    

             360       370       380       390       400       410 
pF1KA0 -SRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSS
        :  . .   .: ::                                             
XP_016 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
          360       370       380       390       400       410    

>>XP_016872639 (OMIM: 607521,614074) PREDICTED: Hermansk  (1129 aa)
 initn: 183 init1:  94 opt: 384  Z-score: 341.5  bits: 75.4 E(85289): 2.8e-12
Smith-Waterman score: 398; 29.6% identity (58.6% similar) in 345 aa overlap (39-366:38-369)

       10        20        30        40        50        60        
pF1KA0 TFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLYCRHLNQMR
                                     :.. ..  ..:.::: : :.:  ..  . :
XP_016 PESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQKEGWKHR
        10        20        30        40        50        60       

       70        80          90       100       110       120      
pF1KA0 KYNFEGKTESITVVKLLSCF--DDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGIH
          : .. :. .. ..  :.  :: ::..:..: :.:..: .   :. .:.    :.. :
XP_016 L--FLSHREG-AISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQMY---VSSEH
          70         80        90       100       110          120 

         130       140       150       160               170       
pF1KA0 KNS-ITALAWSPNGMKLFSGDDKGKIVYSSLDLDQG--------LCNSQLVLEEPSSIVQ
       :.  .::: :.   ...: ::  ::.   .:. ..         .   : .    : .::
XP_016 KGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQ
             130       140       150       160       170       180 

       180       190       200       210       220       230       
pF1KA0 LDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTL-YAS
       ::: .  ::.:.: ::.:  ::...  .::.. :   :..::::.:: :. ..  : : .
XP_016 LDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERD--GEYGACFFPGRCSGGQQPLIYCA
             190       200       210         220       230         

        240       250       260          270       280       290   
pF1KA0 RPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLESPNSGSCSLPERHLGLVS
       ::: :.:...  : : .:  .:  ..    :   .. .:. .   ..: ::   .:  .:
XP_016 RPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLS
     240       250       260       270       280       290         

           300       310       320       330       340       350   
pF1KA0 CFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIRIS-
           :  ::.:.: .::..   :  ..   :   :: .:.  .::.: :. . .. ..: 
XP_016 ----EHCVLTWTERGIYIFIPQNVQVLLWSE-VKDIQDVAVCRNELFCLHLNGKVSHLSL
         300       310       320        330       340       350    

             360       370       380       390       400       410 
pF1KA0 -SRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSS
        :  . .   .: ::                                             
XP_016 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
          360       370       380       390       400       410    

>>XP_011518166 (OMIM: 607521,614074) PREDICTED: Hermansk  (1156 aa)
 initn: 183 init1:  94 opt: 384  Z-score: 341.4  bits: 75.4 E(85289): 2.8e-12
Smith-Waterman score: 398; 29.6% identity (58.6% similar) in 345 aa overlap (39-366:38-369)

       10        20        30        40        50        60        
pF1KA0 TFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLYCRHLNQMR
                                     :.. ..  ..:.::: : :.:  ..  . :
XP_011 PESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQKEGWKHR
        10        20        30        40        50        60       

       70        80          90       100       110       120      
pF1KA0 KYNFEGKTESITVVKLLSCF--DDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGIH
          : .. :. .. ..  :.  :: ::..:..: :.:..: .   :. .:.    :.. :
XP_011 L--FLSHREG-AISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQMY---VSSEH
          70         80        90       100       110          120 

         130       140       150       160               170       
pF1KA0 KNS-ITALAWSPNGMKLFSGDDKGKIVYSSLDLDQG--------LCNSQLVLEEPSSIVQ
       :.  .::: :.   ...: ::  ::.   .:. ..         .   : .    : .::
XP_011 KGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQ
             130       140       150       160       170       180 

       180       190       200       210       220       230       
pF1KA0 LDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTL-YAS
       ::: .  ::.:.: ::.:  ::...  .::.. :   :..::::.:: :. ..  : : .
XP_011 LDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERD--GEYGACFFPGRCSGGQQPLIYCA
             190       200       210         220       230         

        240       250       260          270       280       290   
pF1KA0 RPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLESPNSGSCSLPERHLGLVS
       ::: :.:...  : : .:  .:  ..    :   .. .:. .   ..: ::   .:  .:
XP_011 RPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLS
     240       250       260       270       280       290         

           300       310       320       330       340       350   
pF1KA0 CFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIRIS-
           :  ::.:.: .::..   :  ..   :   :: .:.  .::.: :. . .. ..: 
XP_011 ----EHCVLTWTERGIYIFIPQNVQVLLWSE-VKDIQDVAVCRNELFCLHLNGKVSHLSL
         300       310       320        330       340       350    

             360       370       380       390       400       410 
pF1KA0 -SRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSS
        :  . .   .: ::                                             
XP_011 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
          360       370       380       390       400       410    

>>XP_011518164 (OMIM: 607521,614074) PREDICTED: Hermansk  (1156 aa)
 initn: 183 init1:  94 opt: 384  Z-score: 341.4  bits: 75.4 E(85289): 2.8e-12
Smith-Waterman score: 398; 29.6% identity (58.6% similar) in 345 aa overlap (39-366:38-369)

       10        20        30        40        50        60        
pF1KA0 TFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLYCRHLNQMR
                                     :.. ..  ..:.::: : :.:  ..  . :
XP_011 PESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQKEGWKHR
        10        20        30        40        50        60       

       70        80          90       100       110       120      
pF1KA0 KYNFEGKTESITVVKLLSCF--DDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGIH
          : .. :. .. ..  :.  :: ::..:..: :.:..: .   :. .:.    :.. :
XP_011 L--FLSHREG-AISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQMY---VSSEH
          70         80        90       100       110          120 

         130       140       150       160               170       
pF1KA0 KNS-ITALAWSPNGMKLFSGDDKGKIVYSSLDLDQG--------LCNSQLVLEEPSSIVQ
       :.  .::: :.   ...: ::  ::.   .:. ..         .   : .    : .::
XP_011 KGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQ
             130       140       150       160       170       180 

       180       190       200       210       220       230       
pF1KA0 LDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTL-YAS
       ::: .  ::.:.: ::.:  ::...  .::.. :   :..::::.:: :. ..  : : .
XP_011 LDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERD--GEYGACFFPGRCSGGQQPLIYCA
             190       200       210         220       230         

        240       250       260          270       280       290   
pF1KA0 RPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLESPNSGSCSLPERHLGLVS
       ::: :.:...  : : .:  .:  ..    :   .. .:. .   ..: ::   .:  .:
XP_011 RPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLS
     240       250       260       270       280       290         

           300       310       320       330       340       350   
pF1KA0 CFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIRIS-
           :  ::.:.: .::..   :  ..   :   :: .:.  .::.: :. . .. ..: 
XP_011 ----EHCVLTWTERGIYIFIPQNVQVLLWSE-VKDIQDVAVCRNELFCLHLNGKVSHLSL
         300       310       320        330       340       350    

             360       370       380       390       400       410 
pF1KA0 -SRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSS
        :  . .   .: ::                                             
XP_011 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
          360       370       380       390       400       410    

>>XP_011518165 (OMIM: 607521,614074) PREDICTED: Hermansk  (1156 aa)
 initn: 183 init1:  94 opt: 384  Z-score: 341.4  bits: 75.4 E(85289): 2.8e-12
Smith-Waterman score: 398; 29.6% identity (58.6% similar) in 345 aa overlap (39-366:38-369)

       10        20        30        40        50        60        
pF1KA0 TFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLYCRHLNQMR
                                     :.. ..  ..:.::: : :.:  ..  . :
XP_011 PESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQKEGWKHR
        10        20        30        40        50        60       

       70        80          90       100       110       120      
pF1KA0 KYNFEGKTESITVVKLLSCF--DDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGIH
          : .. :. .. ..  :.  :: ::..:..: :.:..: .   :. .:.    :.. :
XP_011 L--FLSHREG-AISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQMY---VSSEH
          70         80        90       100       110          120 

         130       140       150       160               170       
pF1KA0 KNS-ITALAWSPNGMKLFSGDDKGKIVYSSLDLDQG--------LCNSQLVLEEPSSIVQ
       :.  .::: :.   ...: ::  ::.   .:. ..         .   : .    : .::
XP_011 KGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQ
             130       140       150       160       170       180 

       180       190       200       210       220       230       
pF1KA0 LDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTL-YAS
       ::: .  ::.:.: ::.:  ::...  .::.. :   :..::::.:: :. ..  : : .
XP_011 LDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERD--GEYGACFFPGRCSGGQQPLIYCA
             190       200       210         220       230         

        240       250       260          270       280       290   
pF1KA0 RPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLESPNSGSCSLPERHLGLVS
       ::: :.:...  : : .:  .:  ..    :   .. .:. .   ..: ::   .:  .:
XP_011 RPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLS
     240       250       260       270       280       290         

           300       310       320       330       340       350   
pF1KA0 CFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIRIS-
           :  ::.:.: .::..   :  ..   :   :: .:.  .::.: :. . .. ..: 
XP_011 ----EHCVLTWTERGIYIFIPQNVQVLLWSE-VKDIQDVAVCRNELFCLHLNGKVSHLSL
         300       310       320        330       340       350    

             360       370       380       390       400       410 
pF1KA0 -SRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSS
        :  . .   .: ::                                             
XP_011 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
          360       370       380       390       400       410    

>>XP_016872641 (OMIM: 607521,614074) PREDICTED: Hermansk  (1092 aa)
 initn: 183 init1:  94 opt: 360  Z-score: 320.5  bits: 71.4 E(85289): 4.1e-11
Smith-Waterman score: 374; 30.0% identity (58.1% similar) in 303 aa overlap (81-366:40-332)

               60        70        80          90       100        
pF1KA0 GSSIGMLYLYCRHLNQMRKYNFEGKTESITVVKLLSCF--DDLVAAGTASGRVAVFQLVS
                                     . ..  :.  :: ::..:..: :.:..: .
XP_016 SYSHVLAEFESLDPLLSALRLDSSRLKEGAISQVACCLHDDDYVAVATSQGLVVVWELNQ
      10        20        30        40        50        60         

      110       120        130       140       150       160       
pF1KA0 SLPGRNKQLRRFDVTGIHKNS-ITALAWSPNGMKLFSGDDKGKIVYSSLDLDQG------
          :. .:.    :.. ::.  .::: :.   ...: ::  ::.   .:. ..       
XP_016 ERRGKPEQMY---VSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAA
      70           80        90       100       110       120      

               170       180       190       200       210         
pF1KA0 --LCNSQLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGA
         .   : .    : .::::: .  ::.:.: ::.:  ::...  .::.. :   :..::
XP_016 FVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERD--GEYGA
        130       140       150       160       170         180    

     220       230        240       250       260          270     
pF1KA0 CFIPGLCKQSDLTL-YASRPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLE
       ::.:: :. ..  : : .::: :.:...  : : .:  .:  ..    :   .. .:. .
XP_016 CFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYD
          190       200       210       220       230       240    

         280       290       300       310       320       330     
pF1KA0 SPNSGSCSLPERHLGLVSCFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCT
          ..: ::   .:  .:    :  ::.:.: .::..   :  ..   :   :: .:.  
XP_016 HTAGSSQSLSFPKLLHLS----EHCVLTWTERGIYIFIPQNVQVLLWSE-VKDIQDVAVC
          250       260           270       280        290         

         340       350         360       370       380       390   
pF1KA0 ENEIFFLKGDRNIIRIS--SRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRL
       .::.: :. . .. ..:  :  . .   .: ::                           
XP_016 RNELFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTAD
     300       310       320       330       340       350         

           400       410       420       430       440       450   
pF1KA0 RGSSMASSVASEPRSRSSSLNSTDSGSGLLPPGLQATPELGKGSQPLSQRFNAISSEDFD
                                                                   
XP_016 KLEHLKSQLDHGTYNDLISQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIIS
     360       370       380       390       400       410         

>>XP_016872642 (OMIM: 607521,614074) PREDICTED: Hermansk  (1092 aa)
 initn: 183 init1:  94 opt: 360  Z-score: 320.5  bits: 71.4 E(85289): 4.1e-11
Smith-Waterman score: 374; 30.0% identity (58.1% similar) in 303 aa overlap (81-366:40-332)

               60        70        80          90       100        
pF1KA0 GSSIGMLYLYCRHLNQMRKYNFEGKTESITVVKLLSCF--DDLVAAGTASGRVAVFQLVS
                                     . ..  :.  :: ::..:..: :.:..: .
XP_016 SYSHVLAEFESLDPLLSALRLDSSRLKEGAISQVACCLHDDDYVAVATSQGLVVVWELNQ
      10        20        30        40        50        60         

      110       120        130       140       150       160       
pF1KA0 SLPGRNKQLRRFDVTGIHKNS-ITALAWSPNGMKLFSGDDKGKIVYSSLDLDQG------
          :. .:.    :.. ::.  .::: :.   ...: ::  ::.   .:. ..       
XP_016 ERRGKPEQMY---VSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAA
      70           80        90       100       110       120      

               170       180       190       200       210         
pF1KA0 --LCNSQLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGA
         .   : .    : .::::: .  ::.:.: ::.:  ::...  .::.. :   :..::
XP_016 FVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERD--GEYGA
        130       140       150       160       170         180    

     220       230        240       250       260          270     
pF1KA0 CFIPGLCKQSDLTL-YASRPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLE
       ::.:: :. ..  : : .::: :.:...  : : .:  .:  ..    :   .. .:. .
XP_016 CFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYD
          190       200       210       220       230       240    

         280       290       300       310       320       330     
pF1KA0 SPNSGSCSLPERHLGLVSCFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCT
          ..: ::   .:  .:    :  ::.:.: .::..   :  ..   :   :: .:.  
XP_016 HTAGSSQSLSFPKLLHLS----EHCVLTWTERGIYIFIPQNVQVLLWSE-VKDIQDVAVC
          250       260           270       280        290         

         340       350         360       370       380       390   
pF1KA0 ENEIFFLKGDRNIIRIS--SRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRL
       .::.: :. . .. ..:  :  . .   .: ::                           
XP_016 RNELFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTAD
     300       310       320       330       340       350         

           400       410       420       430       440       450   
pF1KA0 RGSSMASSVASEPRSRSSSLNSTDSGSGLLPPGLQATPELGKGSQPLSQRFNAISSEDFD
                                                                   
XP_016 KLEHLKSQLDHGTYNDLISQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIIS
     360       370       380       390       400       410         




1411 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:36:04 2016 done: Wed Nov  2 18:36:06 2016
 Total Scan time: 16.350 Total Display time:  0.340

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com