Result of FASTA (ccds) for pF1KA0185
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0185, 1871 aa
  1>>>pF1KA0185 1871 - 1871 aa - 1871 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5783+/-0.00137; mu= 15.4456+/- 0.082
 mean_var=189.6920+/-38.858, 0's: 0 Z-trim(104.2): 51  B-trim: 0 in 0/52
 Lambda= 0.093121
 statistics sampled from 7765 (7784) to 7765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.239), width:  16
 Scan time:  6.570

The best scores are:                                      opt bits E(32554)
CCDS31276.1 PDCD11 gene_id:22984|Hs108|chr10       (1871) 12122 1643.4       0


>>CCDS31276.1 PDCD11 gene_id:22984|Hs108|chr10            (1871 aa)
 initn: 12122 init1: 12122 opt: 12122  Z-score: 8809.8  bits: 1643.4 E(32554):    0
Smith-Waterman score: 12122; 99.9% identity (100.0% similar) in 1871 aa overlap (1-1871:1-1871)

               10        20        30        40        50        60
pF1KA0 MANLEESFPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MANLEESFPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 KRESSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KRESSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 KKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNRVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNRVLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 AEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 CIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 LTFFTGVVDFMHLDPKKAGTYFSNQAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LTFFTGVVDFMHLDPKKAGTYFSNQAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 CQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 IIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 PPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 PGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 PSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 KNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 AKVTNVDEEKQRMLLSLRLSDCGLGDLAITSLLLLNQCLEELQGVRSLMSNRDSVLIQTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AKVTNVDEEKQRMLLSLRLSDCGLGDLAITSLLLLNQCLEELQGVRSLMSNRDSVLIQTL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 AEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVD
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 LLKLEVHVSLHQDLVNRKARKLRKGSEHQAIVQHLEKSFAIASLVETGHLAAFSLTSHLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LLKLEVHVSLHQDLVNRKARKLRKGSEHQAIVQHLEKSFAIASLVETGHLAAFSLTSHLN
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 DTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVD
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 PALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPTT
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 KLKVGKTVTARVIGGRDMKTFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KLKVGKTVTARVIGGRDMKTFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPM
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 EKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVG
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 QALRATVVGPDSSKTFLCLSLTGPHKLEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSI
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QALRATVVGPDSSKTLLCLSLTGPHKLEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSI
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA0 FHMSDSYSETPLEDFVPQKVVRCYILSTADNVLTLSLRSSRTNPETKSKVEDPEINSIQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FHMSDSYSETPLEDFVPQKVVRCYILSTADNVLTLSLRSSRTNPETKSKVEDPEINSIQD
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA0 IKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSPSKKALYNKHLPEGKLLTAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSPSKKALYNKHLPEGKLLTAR
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KA0 VLRLNHQKNLVELSFLPGDTGKPDVLSASLEGQLTKQEERKTEAEERDQKGEKKNQKRNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VLRLNHQKNLVELSFLPGDTGKPDVLSASLEGQLTKQEERKTEAEERDQKGEKKNQKRNE
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KA0 KKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECRESGSEQERVSKKPKKAGLSEEDDSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECRESGSEQERVSKKPKKAGLSEEDDSLV
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
pF1KA0 DVYYREGKEEAEETNVLPKEKQTKPAEAPRLQLSSGFAWNVGLDSLTPALPPLAESSDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DVYYREGKEEAEETNVLPKEKQTKPAEAPRLQLSSGFAWNVGLDSLTPALPPLAESSDSE
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610      1620
pF1KA0 EDEKPHQATIKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EDEKPHQATIKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSI
             1570      1580      1590      1600      1610      1620

             1630      1640      1650      1660      1670      1680
pF1KA0 LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKV
             1630      1640      1650      1660      1670      1680

             1690      1700      1710      1720      1730      1740
pF1KA0 FERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQ
             1690      1700      1710      1720      1730      1740

             1750      1760      1770      1780      1790      1800
pF1KA0 AAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSV
             1750      1760      1770      1780      1790      1800

             1810      1820      1830      1840      1850      1860
pF1KA0 YIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALE
             1810      1820      1830      1840      1850      1860

             1870 
pF1KA0 YVEAKSSVLED
       :::::::::::
CCDS31 YVEAKSSVLED
             1870 




1871 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:20:53 2016 done: Wed Nov  2 18:20:54 2016
 Total Scan time:  6.570 Total Display time:  0.170

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com