Result of FASTA (ccds) for pF1KA0121
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0121, 290 aa
  1>>>pF1KA0121 290 - 290 aa - 290 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0556+/-0.000671; mu= 8.8748+/- 0.041
 mean_var=124.1527+/-24.929, 0's: 0 Z-trim(115.0): 8  B-trim: 66 in 1/49
 Lambda= 0.115106
 statistics sampled from 15531 (15538) to 15531 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.477), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS2606.1 VGLL4 gene_id:9686|Hs108|chr3           ( 290) 1964 336.3 1.6e-92
CCDS68343.1 VGLL4 gene_id:9686|Hs108|chr3          ( 295) 1827 313.5 1.1e-85
CCDS46754.1 VGLL4 gene_id:9686|Hs108|chr3          ( 296) 1826 313.4 1.3e-85
CCDS68342.1 VGLL4 gene_id:9686|Hs108|chr3          ( 231) 1586 273.5   1e-73
CCDS46756.1 VGLL4 gene_id:9686|Hs108|chr3          ( 206) 1397 242.0 2.7e-64
CCDS46755.1 VGLL4 gene_id:9686|Hs108|chr3          ( 210) 1394 241.5 3.8e-64


>>CCDS2606.1 VGLL4 gene_id:9686|Hs108|chr3                (290 aa)
 initn: 1964 init1: 1964 opt: 1964  Z-score: 1774.5  bits: 336.3 E(32554): 1.6e-92
Smith-Waterman score: 1964; 99.7% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KA0 METPLDVLSRAASLVHADDEKREAALRGEPRMQTLPVASALSSHRTGPPPISPSKRKFSM
       :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS26 METPLDVLSRAASLVHADDEKREAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 EPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 EPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 YTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 YTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 PIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 PIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDH
              190       200       210       220       230       240

              250       260       270       280       290
pF1KA0 FAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 FAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
              250       260       270       280       290

>>CCDS68343.1 VGLL4 gene_id:9686|Hs108|chr3               (295 aa)
 initn: 1826 init1: 1826 opt: 1827  Z-score: 1651.5  bits: 313.5 E(32554): 1.1e-85
Smith-Waterman score: 1827; 97.5% identity (98.5% similar) in 275 aa overlap (16-290:21-295)

                    10        20        30        40        50     
pF1KA0      METPLDVLSRAASLVHADDEKREAALRGEPRMQTLPVASALSSHRTGPPPISPSK
                           :   .. :::::::::.:::::::::::::::::::::::
CCDS68 MTENTHFDKIPESCALKSWRHPGLHHGEAALRGEPRIQTLPVASALSSHRTGPPPISPSK
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KA0 RKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSL
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KA0 HGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 HGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KA0 NLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITG
              190       200       210       220       230       240

         240       250       260       270       280       290
pF1KA0 SVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
              250       260       270       280       290     

>>CCDS46754.1 VGLL4 gene_id:9686|Hs108|chr3               (296 aa)
 initn: 1826 init1: 1826 opt: 1826  Z-score: 1650.6  bits: 313.4 E(32554): 1.3e-85
Smith-Waterman score: 1826; 99.6% identity (100.0% similar) in 268 aa overlap (23-290:29-296)

                     10        20        30        40        50    
pF1KA0       METPLDVLSRAASLVHADDEKREAALRGEPRMQTLPVASALSSHRTGPPPISPS
                                   :::::::::.::::::::::::::::::::::
CCDS46 MLFMKMDLLNYQYLDKMNNNIGILCYEGEAALRGEPRIQTLPVASALSSHRTGPPPISPS
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KA0 KRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMS
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KA0 LHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARN
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KA0 CNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT
              190       200       210       220       230       240

          240       250       260       270       280       290
pF1KA0 GSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
              250       260       270       280       290      

>>CCDS68342.1 VGLL4 gene_id:9686|Hs108|chr3               (231 aa)
 initn: 1586 init1: 1586 opt: 1586  Z-score: 1436.7  bits: 273.5 E(32554): 1e-73
Smith-Waterman score: 1586; 100.0% identity (100.0% similar) in 231 aa overlap (60-290:1-231)

      30        40        50        60        70        80         
pF1KA0 PRMQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTA
                                     ::::::::::::::::::::::::::::::
CCDS68                               MEPGDEDLDCDNDHVSKMSRIFNPHLNKTA
                                             10        20        30

      90       100       110       120       130       140         
pF1KA0 NGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLS
               40        50        60        70        80        90

     150       160       170       180       190       200         
pF1KA0 PTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVV
              100       110       120       130       140       150

     210       220       230       240       250       260         
pF1KA0 EEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRR
              160       170       180       190       200       210

     270       280       290
pF1KA0 GQPASPSAHMVSHSHSPSVVS
       :::::::::::::::::::::
CCDS68 GQPASPSAHMVSHSHSPSVVS
              220       230 

>>CCDS46756.1 VGLL4 gene_id:9686|Hs108|chr3               (206 aa)
 initn: 1397 init1: 1397 opt: 1397  Z-score: 1267.8  bits: 242.0 E(32554): 2.7e-64
Smith-Waterman score: 1397; 99.5% identity (100.0% similar) in 206 aa overlap (85-290:1-206)

           60        70        80        90       100       110    
pF1KA0 KRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMS
                                     .:::::::::::::::::::::::::::::
CCDS46                               MNKTANGDCRRDPRERSRSPIERAVAPTMS
                                             10        20        30

          120       130       140       150       160       170    
pF1KA0 LHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARN
               40        50        60        70        80        90

          180       190       200       210       220       230    
pF1KA0 CNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT
              100       110       120       130       140       150

          240       250       260       270       280       290
pF1KA0 GSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
              160       170       180       190       200      

>>CCDS46755.1 VGLL4 gene_id:9686|Hs108|chr3               (210 aa)
 initn: 1394 init1: 1394 opt: 1394  Z-score: 1265.0  bits: 241.5 E(32554): 3.8e-64
Smith-Waterman score: 1394; 100.0% identity (100.0% similar) in 205 aa overlap (86-290:6-210)

          60        70        80        90       100       110     
pF1KA0 RKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSL
                                     ::::::::::::::::::::::::::::::
CCDS46                          MIKVRNKTANGDCRRDPRERSRSPIERAVAPTMSL
                                        10        20        30     

         120       130       140       150       160       170     
pF1KA0 HGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC
          40        50        60        70        80        90     

         180       190       200       210       220       230     
pF1KA0 NLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITG
         100       110       120       130       140       150     

         240       250       260       270       280       290
pF1KA0 SVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
         160       170       180       190       200       210




290 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:09:31 2016 done: Wed Nov  2 18:09:31 2016
 Total Scan time:  2.540 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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