GENSCAN 1.0	Date run:  2-Nov-116	Time: 18:09:52

Sequence gi568815595r:11458559_11803034 : 344476 bp : 45.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.07 PlyA -    946    941    6                              -0.45
 1.06 Term -   3801   3638  164  1  2   88   44    78 0.325   1.50
 1.05 Intr -  15631  15521  111  2  0   91  111     2 0.650   3.15
 1.04 Intr -  25329  25183  147  1  0  111   65    52 0.827   5.41
 1.03 Intr -  29882  29672  211  2  1    1   53   132 0.056  -0.51
 1.02 Intr -  30568  30424  145  0  1   30   41   159 0.039   5.68
 1.01 Init -  32674  32463  212  1  2   59  102   127 0.649   9.46
 1.00 Prom -  33628  33589   40                              -3.06

 2.05 PlyA -  34587  34582    6                               1.05
 2.04 Term -  41506  41297  210  1  0   35   42   142 0.127   1.59
 2.03 Intr -  62001  61957   45  0  0  113   72    56 0.084   5.11
 2.02 Intr -  62447  62297  151  1  1   61   76    54 0.446   1.66
 2.01 Init -  65419  65310  110  1  2   98   62    50 0.371   1.26
 2.00 Prom -  68527  68488   40                              -5.26

 3.00 Prom +  69234  69273   40                              -3.36
 3.01 Init +  71173  71304  132  0  0   92   41    74 0.491   3.27
 3.02 Intr +  75886  76183  298  0  1  102   70    90 0.346   5.05
 3.03 Intr +  76802  76889   88  0  1   74   72    12 0.296  -2.77
 3.04 Term +  78118  78235  118  1  1   67   47   103 0.431   2.11
 3.05 PlyA +  78459  78464    6                               1.05

 4.12 PlyA -  78758  78753    6                              -0.45
 4.11 Term -  79589  79148  442  1  1   66   46   164 0.099   4.73
 4.10 Intr -  90320  90151  170  2  2  104   79   100 0.492   9.44
 4.09 Intr - 100269 100034  236  1  2  118   49   351 0.047  31.61
 4.08 Intr - 100897 100774  124  1  1  107  101   116 0.999  14.96
 4.07 Intr - 106461 106239  223  2  1  121   80   273 0.988  27.93
 4.06 Intr - 109979 109879  101  2  2   83   47    56 0.140  -0.09
 4.05 Intr - 136274 136176   99  2  0   80   49    48 0.049   0.41
 4.04 Intr - 138815 138702  114  2  0   46   89    51 0.088   1.64
 4.03 Intr - 142134 142062   73  2  1   52   53    63 0.127  -1.39
 4.02 Intr - 143464 143275  190  2  1   90   65   225 0.477  19.04
 4.01 Init - 145672 145537  136  1  1   68   36   120 0.609   5.13
 4.00 Prom - 149812 149773   40                              -4.26

 5.03 PlyA - 149941 149936    6                               1.05
 5.02 Term - 156241 156174   68  2  2  121   53    41 0.233   2.00
 5.01 Init - 184945 184879   67  1  1   75   71   134 0.378  11.63
 5.00 Prom - 197783 197744   40                              -0.36

 6.00 Prom + 204421 204460   40                              -6.46
 6.01 Init + 212705 212849  145  1  1   70  103   134 0.881  13.38
 6.02 Term + 214122 214144   23  1  2   69   32    61 0.083  -2.93
 6.03 PlyA + 214269 214274    6                               1.05

 7.00 Prom + 214320 214359   40                              -0.96
 7.01 Init + 233294 233403  110  1  2   70   45   128 0.656   6.39
 7.02 Term + 237668 237692   25  2  1  109   43    21 0.390  -2.60
 7.03 PlyA + 239197 239202    6                               1.05

 8.04 PlyA - 240212 240207    6                               1.05
 8.03 Term - 243700 243687   14  2  2  101   39    11 0.208  -4.14
 8.02 Intr - 244489 244413   77  0  2  104  111    71 0.426  10.16
 8.01 Init - 261360 261272   89  0  2   78   64   112 0.142   5.92
 8.00 Prom - 263462 263423   40                              -3.26

 9.06 PlyA - 265510 265505    6                               1.05
 9.05 Term - 266914 266444  471  1  0    9   49   220 0.150   5.13
 9.04 Intr - 287888 287781  108  2  0   56  115    47 0.037   4.68
 9.03 Intr - 312720 312685   36  0  0   80   99    32 0.530   1.96
 9.02 Intr - 318029 317898  132  2  0   33   98    63 0.444   2.64
 9.01 Init - 321450 321337  114  0  0   60   68    87 0.501   4.11

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  92684  92643   42  2  0  107   69    35 0.930   3.94
S.002 Init + 175298 175318   21  1  0   95   99     4 0.869   2.03
S.003 Term + 175491 175724  234  2  0   98   49   100 0.860   3.42
S.004 Term + 216071 216180  110  0  2   92   53    58 0.856   1.37
S.005 Init + 293562 293682  121  2  1   60  101   140 0.847  12.88
S.006 Init + 333516 333577   62  2  2   55   94    66 0.870   4.62


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:11458559_11803034|GENSCAN_predicted_peptide_1|329_aa
MEDEMNEMKQEGKFREKRIKRNEQSLQEIWDYVKRPNLRLIAVPESDGENGTKLENTLQD
IIQEKFPNLARLNQEEVEFLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELP
PLPDRREDGVQRAAELSQSLPPRRRVPPGRQRLEERTDPAGPEGKEQPPALASQSAEIAA
SARPPPRLGKCWEHNVAYEAQGINIVPIRCSLNSTVESILIGCRVIVYKTHCIKADNILL
RRVLSIQKTLDEYVVSPSEPCKSPARWWHLAYYTLGLVTTINFVFLSLSCVSFLWLHLTD
YLIKEHKTALSNGDERALNLPRLQQKSLN

>gi568815595r:11458559_11803034|GENSCAN_predicted_CDS_1|990_bp
atggaagatgaaatgaatgaaatgaagcaagaagggaagtttagagaaaaaagaataaaa
agaaacgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtttg
attgctgtacctgaaagtgacggggaaaatggaaccaagctggaaaacactctgcaggat
attattcaggagaaattccccaatctagcaagactaaaccaggaagaagttgaatttctg
aatagaccaataacaggctctgaaattgtggcaataatcaatagcttaccaaccaaaaag
agtccaggaccagatggattcacagccgaattctaccagaggtacaaggaggaactgccg
ccgctgcccgaccgccgggaggatggagttcagcgggcagcggagctgtctcagtctttg
ccgccgcgccggcgagtgccgcccgggaggcagcggctggaggagcggacggaccccgcg
gggcccgagggcaaggagcagccgcctgccttggcctcccaaagtgccgagattgcagcc
tctgcccggccgccaccccgtctgggaaaatgctgggaacacaatgtagcctacgaagcc
caaggaataaacattgtgccaataagatgttctttaaattctaccgtagagtccatcctg
attggctgcagggtcattgtgtacaaaacccactgcattaaagcagataacatcttgctt
agaagagtgctgagcattcagaagacactggatgaatatgtcgtatcccccagtgagccc
tgcaaatcacctgccaggtggtggcacttggcttactacacacttggacttgtgaccacg
ataaactttgtcttcctgagcctctcctgtgtctccttcttgtggctgcacctaacagac
tatctcataaaagaacataaaacagcccttagcaatggtgacgagagggccctgaacctt
ccaaggctccagcagaagtccttaaactga

>gi568815595r:11458559_11803034|GENSCAN_predicted_peptide_2|171_aa
MQSAMALDKGWALGLGTMKCCSYYQTSGNRRFCVQSSSCVGPGATTTPLMLIGSLKCKEM
LTCLQNVGPMEKTHNQLCLLLREECWRGQHGIFLIPMSPAHPHPQKMLKWILFELLLDQG
TQNTPELVAFVAHQEIRIKMLIKYLLATYYEDCIAQCILGDAQDWYDTTPV

>gi568815595r:11458559_11803034|GENSCAN_predicted_CDS_2|516_bp
atgcagagcgcaatggctctagacaaggggtgggcgctggggctggggaccatgaagtgt
tgcagttattaccagacaagtggaaacagaagattctgtgtccagtccagctcctgcgtg
gggcctggagcaactactactcccctgatgctaataggcagccttaagtgcaaggaaatg
ctcacttgtttgcagaatgttggccccatggagaagactcacaaccaactgtgcctactt
ctcagggaagaatgctggcggggccagcacggcatcttcctcatccccatgtccccagcc
catccgcatccccagaagatgttaaaatggattttatttgaattattgctggaccaggga
actcagaacactcctgaacttgtggcgtttgtggcccatcaggaaataaggattaagatg
ctcataaaatatttgttggccacctactatgaggactgcattgcccaatgcatcttgggg
gatgcacaagactggtatgatactacacctgtgtaa

>gi568815595r:11458559_11803034|GENSCAN_predicted_peptide_3|211_aa
MAGDTPHVIVVAVGGDRAERTRELMSLPEGTKDAEMALCSSAPQAGPVLPCGLDMLMEER
TPPQSQGGLERIRVLPECASFMPGGYVPPGRDCILRFRSRCAKGSCHTPSVSRTWSWAPN
GPSGVKSRCLQPTVGRCSLPAQPVAPSMVPKSLWRNPGFCDSQSLLRRPSLSRCGTNLLP
RPCGSDRGRAAKDHPGLVTYDSGSSSAGDLA

>gi568815595r:11458559_11803034|GENSCAN_predicted_CDS_3|636_bp
atggcaggggacaccccacacgtcatcgtggtagcagtgggaggggacagggcagaaagg
accagagagttgatgtctctgcccgaaggtaccaaggatgctgagatggctctgtgctcg
tcagcccctcaggcaggtcctgtgttgccctgtgggttagacatgctcatggaggagagg
acacctccccagagccaaggcggtctggaacgcatcagggttcttcctgaatgtgcgtcc
ttcatgccgggtggctacgtgccgccaggcagggactgcatactgcggtttcgtagtcgc
tgtgctaaggggagctgccacacgccgtctgttagcaggacatggagttgggccccaaat
ggccctagtggtgtcaaaagcagatgtcttcaacccacagtgggacgctgctccctccca
gcgcagcctgtggcacccagcatggtgcccaagtccctgtggaggaaccctggcttttgt
gattctcaaagtcttctgcgtcggccctccctgagcaggtgcggaacgaacctgctgccc
cgaccctgcggctccgaccggggccgagcagcgaaggaccaccctggtctggtcacctac
gattctgggtccagctcagctggtgaccttgcttag

>gi568815595r:11458559_11803034|GENSCAN_predicted_peptide_4|635_aa
MLKYYSTHLPPSPRDLVEASVTVPGEGHLECLHGACSPSPGPTPTREAALRGEPRIQTLP
VASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLSSVLAFRSFQS
AWTVVFSHKTLTEKSLKKMNVCLEVEKYSVFGKSGLKDGKRWSGIHLVEKSLLTLDFSCV
ALYYLHASKLIQPVPCVWTFWQFQCLCLTHSAHCAVFHGLSFQLVGLEVPFSLLPCVGNK
TANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAG
LSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDP
VVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESAS
RRGQPASPSAHMESVLKTHLHYTKGYYPLLHDLLQEKTGNRPKRPSAGNQLTKPFDAHPH
LDYCGPETQNATNLPSGSLWPSGTSVSPGVHISPSQLDNRGHLESHTGTYALFPPPFPGL
FYIQGQISARYHFGSVALGIKETALDLGQDAPNFGSGLYQPPALCGLARFSGLSFPAGKY
ISPFYHQPYRGYQGYIKQLESTDPEPGTEQGLRKC

>gi568815595r:11458559_11803034|GENSCAN_predicted_CDS_4|1908_bp
atgctgaagtactacagcacgcatttaccaccgtctccccgggacctggtggaggcgtct
gtcacagtccctggtgaaggacacctggagtgccttcatggggcctgtagccccagccct
ggtcccacccccacccgcgaagctgctctcaggggagaacccagaatacagaccctgccg
gtggcctctgccctcagcagtcaccgcaccggccctcccccaatcagccccagcaagagg
aagttcagcatggagccaggtgacgaggacctagactgtgacaacgaccacgtctccaaa
atgagtcgcatcttcaacccccatctctccagcgtcctcgcattccgctcgttccagtca
gcttggactgttgtgttcagtcataagacactgacagagaaaagtcttaagaagatgaat
gtctgtttggaagttgaaaagtactctgtgtttggaaagagtggattaaaggatgggaag
aggtggagtgggattcatcttgtggaaaaatcactcctcactctggatttcagctgcgtg
gcactctattacctgcatgcatcaaagctcatccaaccagtcccctgtgtttggacattt
tggcaatttcagtgtctttgtctgacccatagtgcccactgtgctgtgttccacggactg
tctttccagttagtgggcctggaagtccccttctccctgctgccctgcgtagggaacaag
actgccaatggagactgccgcagagacccccgggagcggagccgcagccccatcgagcgc
gctgtggcccccaccatgagcctgcacggcagccacctgtacacctccctccccagcctt
ggcctggagcagcccctcgcactgaccaagaacagcctggacgccagcaggccagccggc
ctctcgcccacactgaccccgggggagcggcagcagaaccggccctccgtgatcacctgt
gcctcggctggcgcccgcaactgcaacctctcgcactgccccatcgcgcacagcggctgt
gccgcgcccgggcctgccagctaccggaggccaccgagcgctgccaccacctgtgacccc
gtggtggaggagcatttccgcaggagcctgggcaagaattacaaggagcccgagccggca
cccaactccgtgtccatcacgggctccgtggacgaccactttgccaaagctctgggtgac
acgtggctccagatcaaagcggccaaggacggagcatccagcagccctgagtccgcctct
cgcaggggccagcccgccagcccctctgcccacatggagtctgtcctgaagacacacctc
cactatacgaaaggatattatcccctgctgcatgatctcttacaggaaaagactgggaac
aggcccaagaggccctcagcggggaaccagctgactaaaccatttgatgcacatccacac
ctggactactgtggccctgaaacacaaaatgccaccaaccttccgtcaggttccctgtgg
ccctcaggaacatctgtcagccctggggtccacatatctcctagccagctggacaacagg
ggtcatctggaatcccacactgggacctatgccctcttccctccacctttccctggcctc
ttctacattcagggccagatctcggccaggtaccactttggctctgtggcattgggtata
aaggaaacagcactggacttggggcaagacgctcccaattttggatccgggctctaccag
ccaccagctctctgtgggctagctcgtttctcaggactcagtttccccgcaggaaaatac
atctctccattttaccaccaaccatacagaggttatcaaggatacataaaacaactggaa
agcacagacccagaacctggcaccgagcagggcctcaggaaatgttaa

>gi568815595r:11458559_11803034|GENSCAN_predicted_peptide_5|44_aa
MDLLNYQYLDKMNNNIGILCYEGLSGSRMVCVPKSLMLLPLCQD

>gi568815595r:11458559_11803034|GENSCAN_predicted_CDS_5|135_bp
atggacctgttgaactatcagtacttggacaagatgaacaacaatatcggcattctgtgc
tacgaagggttgtcaggctctcgaatggtgtgcgtgcccaagtccctaatgctgcttcca
ctgtgtcaggactga

>gi568815595r:11458559_11803034|GENSCAN_predicted_peptide_6|55_aa
MVQTWMSPTFECTGLRDFVKMRILSHQFRSEDYDSAFLTSSQVTLWATCEDTENR

>gi568815595r:11458559_11803034|GENSCAN_predicted_CDS_6|168_bp
atggtgcagacctggatgtctccaacttttgagtgcacaggactcagggattttgtcaaa
atgcgtattctcagtcatcagttccgcagcgaggactacgattctgcatttctaacaagt
tcccaggtgacgctgtgggccacatgtgaggacacggagaaccggtaa

>gi568815595r:11458559_11803034|GENSCAN_predicted_peptide_7|44_aa
MSSEDISNTGWLTALEMFTPDTDRGSDSQSGERRDDGAPEDLAL

>gi568815595r:11458559_11803034|GENSCAN_predicted_CDS_7|135_bp
atgagctcagaagacatctccaacacaggatggctgacagcactggagatgttcacacca
gatactgaccggggcagtgactctcaaagtggagagagaagagatgatggggcaccagag
gacttggcactctga

>gi568815595r:11458559_11803034|GENSCAN_predicted_peptide_8|59_aa
MSTRPARWRLSGAPAPTNLTAPARRHRPGRLQPGMETPLDVLSRAASLVHADDEKRYYQ

>gi568815595r:11458559_11803034|GENSCAN_predicted_CDS_8|180_bp
atgtccactcgccctgcccgctggcgcctctcgggagcgcccgccccgacaaacctcact
gccccagcgcgccggcatcggcccgggaggctccaaccaggaatggagacgccattggat
gttttgtccagggcagcatctctggtgcatgctgatgacgaaaaacgttactatcagtga

>gi568815595r:11458559_11803034|GENSCAN_predicted_peptide_9|286_aa
MDQKGQIEVMSRKWTQYNLMTDYGEGLAKAPAGTNGRMATWDGLLLRGHKPVQQVTVLNT
EAVVNTVVSTVCLDMSTHSKGTPAKKRERRVTHQLLALIGKAALTFVHKSSSNITFLLGK
QLTVHFWRHMNEKKKKEEEEEEEEEERRRRRRRGRRKRRRRKRRRRRRKKRRRRRRKKGG
GGEEKKEEEKKEKEEKREEEKEKEEGEEKEKEEREEKEEEKEEGAKEGREQGGRRRGRRR
GERRRGGGGGAGGGSVRGRGRRGKRGRGRRTGRRKRRIRFSEQSEL

>gi568815595r:11458559_11803034|GENSCAN_predicted_CDS_9|861_bp
atggaccaaaagggacagattgaagtgatgtctaggaagtggactcagtacaacttgatg
actgactatggagaagggcttgccaaggctcccgctggcacaaatgggagaatggctaca
tgggatggcctactgctccgaggccacaaacctgtacagcaggttactgtgctgaatacc
gaggcagttgttaacacagtggtgagcactgtgtgtctagacatgtccacacatagcaaa
ggtacaccagccaagaagagggaacgcagggtgactcaccagcttttggctcttattggt
aaagctgctctgacatttgtgcacaagtcttctagtaacattacatttctcttgggtaaa
cagctcactgtacacttctggcgtcatatgaatgagaagaagaagaaggaggaggaggag
gaggaggaggaggaggaaagaagaagaagaagaagaagaggaagaagaaaaagaaggagg
aggaagaggaggaggagaagaagaaaaaaaaggaggaggaggagaagaaaaaaaggagga
ggaggagaagaaaaaaaggaggaggagaagaaggagaaggaggagaagagggaggaagaa
aaggagaaggaggagggggaggagaaggagaaggaggagagggaggagaaggaggaggag
aaggaggagggagcaaaagagggaagagaacaaggagggaggagaagaggaaggagaaga
ggagagaggagaagaggagggggaggaggggcaggaggaggaagtgtaagaggaagagga
agaagaggaaaaagaggaagaggaagaagaacaggaagaagaaagagaagaatcagattc
tctgagcaatctgaactatga