FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2768, 224 aa 1>>>pF1KE2768 224 - 224 aa - 224 aa Library: human.CCDS.faa 18921897 residues in 33420 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0131+/-0.00093; mu= 11.8593+/- 0.055 mean_var=119.0601+/-24.903, 0's: 0 Z-trim(109.3): 121 B-trim: 415 in 1/52 Lambda= 0.117541 statistics sampled from 10772 (10911) to 10772 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.326), width: 16 Scan time: 1.040 The best scores are: opt bits E(33420) CCDS7947.2 TRIM48 gene_id:79097|Hs109|chr11 ( 224) 1573 277.3 5.7e-75 CCDS60930.1 TRIM49D1 gene_id:399939|Hs109|chr11 ( 452) 1157 207.0 1.6e-53 CCDS53694.1 TRIM49C gene_id:642612|Hs109|chr11 ( 452) 1041 187.4 1.3e-47 CCDS8287.1 TRIM49 gene_id:57093|Hs109|chr11 ( 452) 1041 187.4 1.3e-47 CCDS55762.1 TRIM49B gene_id:283116|Hs109|chr11 ( 452) 1027 185.0 7e-47 CCDS2015.1 TRIM43 gene_id:129868|Hs109|chr2 ( 446) 729 134.4 1.1e-31 CCDS53693.1 TRIM64B gene_id:642446|Hs109|chr11 ( 449) 568 107.1 1.9e-23 CCDS73363.1 TRIM64 gene_id:120146|Hs109|chr11 ( 449) 561 106.0 4.3e-23 CCDS73287.1 TRIM64C gene_id:646754|Hs109|chr11 ( 450) 530 100.7 1.6e-21 CCDS60929.1 TRIM77 gene_id:390231|Hs109|chr11 ( 450) 487 93.4 2.6e-19 CCDS5678.1 TRIM4 gene_id:89122|Hs109|chr7 ( 474) 397 78.2 1e-14 CCDS34378.1 TRIM39 gene_id:56658|Hs109|chr6 ( 488) 358 71.6 1e-12 CCDS78121.1 RPP21 gene_id:202658|Hs109|chr6 ( 503) 358 71.6 1.1e-12 CCDS34377.1 TRIM39 gene_id:56658|Hs109|chr6 ( 518) 358 71.6 1.1e-12 CCDS31048.1 TRIM11 gene_id:81559|Hs109|chr1 ( 468) 355 71.0 1.4e-12 CCDS31356.1 TRIM68 gene_id:55128|Hs109|chr11 ( 485) 350 70.2 2.7e-12 CCDS4654.1 TRIM27 gene_id:5987|Hs109|chr6 ( 513) 348 69.9 3.5e-12 CCDS3808.1 TRIM60 gene_id:166655|Hs109|chr4 ( 471) 346 69.5 4.2e-12 CCDS44327.1 TRIM17 gene_id:51127|Hs109|chr1 ( 343) 344 69.0 4.2e-12 CCDS1571.1 TRIM17 gene_id:51127|Hs109|chr1 ( 477) 344 69.2 5.3e-12 CCDS44525.1 TRIM21 gene_id:6737|Hs109|chr11 ( 475) 342 68.8 6.7e-12 CCDS5679.1 TRIM4 gene_id:89122|Hs109|chr7 ( 500) 341 68.7 7.8e-12 CCDS31389.1 TRIM6 gene_id:117854|Hs109|chr11 ( 516) 332 67.2 2.3e-11 CCDS31390.1 TRIM6 gene_id:117854|Hs109|chr11 ( 488) 331 67.0 2.5e-11 CCDS31388.1 TRIM34 gene_id:445372|Hs109|chr11 ( 842) 332 67.4 3.3e-11 CCDS31392.1 TRIM5 gene_id:85363|Hs109|chr11 ( 326) 322 65.3 5.4e-11 CCDS31394.1 TRIM5 gene_id:85363|Hs109|chr11 ( 347) 322 65.3 5.6e-11 CCDS31393.1 TRIM5 gene_id:85363|Hs109|chr11 ( 493) 322 65.5 7.2e-11 CCDS34093.1 TRIM61 gene_id:391712|Hs109|chr4 ( 209) 316 64.1 8e-11 >>CCDS7947.2 TRIM48 gene_id:79097|Hs109|chr11 (224 aa) initn: 1573 init1: 1573 opt: 1573 Z-score: 1459.6 bits: 277.3 E(33420): 5.7e-75 Smith-Waterman score: 1573; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224) 10 20 30 40 50 60 pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR 130 140 150 160 170 180 190 200 210 220 pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF :::::::::::::::::::::::::::::::::::::::::::: CCDS79 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF 190 200 210 220 >>CCDS60930.1 TRIM49D1 gene_id:399939|Hs109|chr11 (452 aa) initn: 1198 init1: 1156 opt: 1157 Z-score: 1074.5 bits: 207.0 E(33420): 1.6e-53 Smith-Waterman score: 1157; 89.5% identity (94.5% similar) in 181 aa overlap (17-197:1-179) 10 20 30 40 50 60 pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ ::::::::::::::::::.::::::::::::::::::::::::: CCDS60 MNSGISQVFQRELTCPICLNYFIDPVTIDCGHSFCRPCFYLNWQ 10 20 30 40 70 80 90 100 110 120 pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC :::::::::::.:: :::::::::::::::: :::::::::::::::::: ::::::.:: CCDS60 DIPILTQCFECLKTTQQRNLKTNIRLKKMASRARKASLWLFLSSEEQMCGTHRETKKIFC 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR :::::::::::::: ::::::::::::::::: :::::::::::::.::::::::::::: CCDS60 EVDRSLLCLLCSSSLEHRYHRHCPAEWAAEEHREKLLKKMQSLWEKVCENQRNLNVETTR 110 120 130 140 150 160 190 200 210 220 pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF ::::: . .. : :.. CCDS60 ISHWKDYVNV--RLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKDIFHRLHLSKAKMAHR 170 180 190 200 210 220 >>CCDS53694.1 TRIM49C gene_id:642612|Hs109|chr11 (452 aa) initn: 1063 init1: 1040 opt: 1041 Z-score: 968.2 bits: 187.4 E(33420): 1.3e-47 Smith-Waterman score: 1041; 81.2% identity (89.5% similar) in 181 aa overlap (17-197:1-179) 10 20 30 40 50 60 pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ ::::: :::: :: ::.::::::::::::::::::::::::::: CCDS53 MNSGILQVFQGELICPLCMNYFIDPVTIDCGHSFCRPCFYLNWQ 10 20 30 40 70 80 90 100 110 120 pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC :::.:.:: :: :. .: ::::::.::::::::::.:::::::::::::: ::::::.:: CCDS53 DIPFLVQCSECTKSTEQINLKTNIHLKKMASLARKVSLWLFLSSEEQMCGTHRETKKIFC 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR :::::::::::::::::::::: : ::::::: ::::.::::::::::::.::::::::: CCDS53 EVDRSLLCLLCSSSQEHRYHRHRPIEWAAEEHREKLLQKMQSLWEKACENHRNLNVETTR 110 120 130 140 150 160 190 200 210 220 pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF :: . .. : :.. CCDS53 TRCWKDYVNL--RLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFHRLHLSKAKMAHR 170 180 190 200 210 220 >>CCDS8287.1 TRIM49 gene_id:57093|Hs109|chr11 (452 aa) initn: 1063 init1: 1040 opt: 1041 Z-score: 968.2 bits: 187.4 E(33420): 1.3e-47 Smith-Waterman score: 1041; 81.2% identity (89.5% similar) in 181 aa overlap (17-197:1-179) 10 20 30 40 50 60 pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ ::::: :::: :: ::.::::::::::::::::::::::::::: CCDS82 MNSGILQVFQGELICPLCMNYFIDPVTIDCGHSFCRPCFYLNWQ 10 20 30 40 70 80 90 100 110 120 pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC :::.:.:: :: :. .: ::::::.::::::::::.:::::::::::::: ::::::.:: CCDS82 DIPFLVQCSECTKSTEQINLKTNIHLKKMASLARKVSLWLFLSSEEQMCGTHRETKKIFC 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR :::::::::::::::::::::: : ::::::: ::::.::::::::::::.::::::::: CCDS82 EVDRSLLCLLCSSSQEHRYHRHRPIEWAAEEHREKLLQKMQSLWEKACENHRNLNVETTR 110 120 130 140 150 160 190 200 210 220 pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF :: . .. : :.. CCDS82 TRCWKDYVNL--RLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFHRLHLSKAKMAHR 170 180 190 200 210 220 >>CCDS55762.1 TRIM49B gene_id:283116|Hs109|chr11 (452 aa) initn: 1049 init1: 1026 opt: 1027 Z-score: 955.4 bits: 185.0 E(33420): 7e-47 Smith-Waterman score: 1027; 80.7% identity (88.4% similar) in 181 aa overlap (17-197:1-179) 10 20 30 40 50 60 pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ ::::: ::::::: :::::::::::::::::::::::::::::. CCDS55 MNSGILQVFQRELICPICMNYFIDPVTIDCGHSFCRPCFYLNWK 10 20 30 40 70 80 90 100 110 120 pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC : :.:.:: :: :. : ::::::..:::::::::.:::::::::::::: ::::::::: CCDS55 DSPFLVQCSECTKSTGQINLKTNIHFKKMASLARKVSLWLFLSSEEQMCGTHRETKKMFC 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR :::::::::::::::::: ::::: : ::::: ::::.::::::::::::.::::::::: CCDS55 EVDRSLLCLLCSSSQEHRDHRHCPIESAAEEHQEKLLQKMQSLWEKACENHRNLNVETTR 110 120 130 140 150 160 190 200 210 220 pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF :: . .. : :.. CCDS55 TRCWKDYVNL--RLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKDIFHRLHLSKAKMAHR 170 180 190 200 210 220 >>CCDS2015.1 TRIM43 gene_id:129868|Hs109|chr2 (446 aa) initn: 872 init1: 709 opt: 729 Z-score: 682.3 bits: 134.4 E(33420): 1.1e-31 Smith-Waterman score: 729; 55.8% identity (78.5% similar) in 181 aa overlap (17-197:1-179) 10 20 30 40 50 60 pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ :.: .:..::.:::: ::.::..::::: :::::::::. :.:. CCDS20 MDSDFSHAFQKELTCVICLNYLVDPVTICCGHSFCRPCLCLSWE 10 20 30 40 70 80 90 100 110 120 pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC . ..: : . . ..:::: ::.....::::::: :::::.:.:: ::.:::::: CCDS20 EAQSPANCPACREPSPKMDFKTNILLKNLVTIARKASLWQFLSSEKQICGTHRQTKKMFC 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR ..:.::::::::.:::: :.: : : ::::: :::::.:. ::.: :::::: : CCDS20 DMDKSLLCLLCSNSQEHGAHKHHPIEEAAEEHREKLLKQMRILWKKIQENQRNLYEEGRT 110 120 130 140 150 160 190 200 210 220 pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF :. :... :.. . CCDS20 AFLWR--GNVVLRAQMIRNEYRKLHPVLHKEEKQHLERLNKEYQEIFQQLQRSWVKMDQK 170 180 190 200 210 220 >>CCDS53693.1 TRIM64B gene_id:642446|Hs109|chr11 (449 aa) initn: 587 init1: 299 opt: 568 Z-score: 534.8 bits: 107.1 E(33420): 1.9e-23 Smith-Waterman score: 568; 47.6% identity (68.4% similar) in 187 aa overlap (17-202:1-186) 10 20 30 40 50 60 pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ :.: :::: :: : ::.:::::::::::::::::::. : . CCDS53 MDSDDLQVFQNELICCICVNYFIDPVTIDCGHSFCRPCLCLCSE 10 20 30 40 70 80 90 100 110 120 pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC . .: : :: .. :..::. :::..::::.. ..: ...: .:.:::..:: CCDS53 EGRAPMRCPSCRKTSEKPNFNTNLVLKKLSSLARQTRPQN-INSSDNICVLHEETKELFC 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR :.:. ::: :: : :: : : : ::::: :::.:.:. ::: :.. ::: ::. CCDS53 EADKRLLCGPCSESPEHMAHSHSPIGWAAEECREKLIKEMDYLWEINQETRNNLNQETST 110 120 130 140 150 160 190 200 210 220 pF1KE2 ISHWKAFGDILYRSESVLLH-MPQPLNLALRAGPITGLRDRLNQF . : . .. : .. . :: CCDS53 FHSLKDYVSVRKRIITIQYQKMPIFLDEEEQRHLQALEREAEELFQQLQDSQVRMTQHLE 170 180 190 200 210 220 >>CCDS73363.1 TRIM64 gene_id:120146|Hs109|chr11 (449 aa) initn: 613 init1: 295 opt: 561 Z-score: 528.3 bits: 106.0 E(33420): 4.3e-23 Smith-Waterman score: 561; 47.1% identity (67.4% similar) in 187 aa overlap (17-202:1-186) 10 20 30 40 50 60 pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ :.: :::: :: : ::.:::::::::::::::::::. : . CCDS73 MDSDDLQVFQNELICCICVNYFIDPVTIDCGHSFCRPCLCLCSE 10 20 30 40 70 80 90 100 110 120 pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC . .: : : .. :..::. :::..::::.. ..: ...: .:.:::..:: CCDS73 EGRAPMRCPSCRKISEKPNFNTNVVLKKLSSLARQTRPQN-INSSDNICVLHEETKELFC 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR :.:. ::: :: : :: : : : ::::: :::.:.:. ::: :.. ::: :: CCDS73 EADKRLLCGPCSESPEHMAHSHSPIGWAAEECREKLIKEMDYLWEINQETRNNLNQETRT 110 120 130 140 150 160 190 200 210 220 pF1KE2 ISHWKAFGDILYRSESVLLH-MPQPLNLALRAGPITGLRDRLNQF . : . .. : .. . :: CCDS73 FHSLKDYVSVRKRIITIQYQKMPIFLDEEEQRHLQALEREAEELFQQLQDSQVRMTQHLE 170 180 190 200 210 220 >>CCDS73287.1 TRIM64C gene_id:646754|Hs109|chr11 (450 aa) initn: 558 init1: 317 opt: 530 Z-score: 499.9 bits: 100.7 E(33420): 1.6e-21 Smith-Waterman score: 530; 49.1% identity (70.3% similar) in 165 aa overlap (17-180:1-164) 10 20 30 40 50 60 pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ :.: .::: :: : ::.:::::::: :: :::::::. : . CCDS73 MDSDTLRVFQNELICCICVNYFIDPVTTDCVHSFCRPCLCLCSE 10 20 30 40 70 80 90 100 110 120 pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC . .: : : .. :..::. :::.:::::.. ..: ...: .:.:::..:: CCDS73 EGRAPMRCPLCRKISEKPNFNTNVALKKLASLARQTRPQN-INSSDNICVLHEETKELFC 50 60 70 80 90 100 130 140 150 160 170 pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEE-HWEKLLKKMQSLWEKACENQRNLNVETT :.:. ::: :: : :: : : : ::::: . .::.:.:. ::. :.: ::: ::. CCDS73 EADKRLLCGPCSESPEHMAHSHSPIGWAAEECRVQKLIKEMDYLWKINQETQNNLNQETS 110 120 130 140 150 160 180 190 200 210 220 pF1KE2 RISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF . CCDS73 KFCSLVDYVSLRKVIITIQYQKMHIFLDEEEQRHLQALEREAKELFQQLQDSQVRMTQHL 170 180 190 200 210 220 >>CCDS60929.1 TRIM77 gene_id:390231|Hs109|chr11 (450 aa) initn: 567 init1: 463 opt: 487 Z-score: 460.5 bits: 93.4 E(33420): 2.6e-19 Smith-Waterman score: 487; 42.2% identity (65.2% similar) in 187 aa overlap (17-203:1-185) 10 20 30 40 50 60 pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ : :.:.: :::: :: .:. ::::: ::: :: ::. : :. CCDS60 MASAITQCSTSELTCSICTDYLTDPVTICCGHRFCSPCLCLLWE 10 20 30 40 70 80 90 100 110 120 pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC : . : : . :: .: : .:.. .:.. . :: .: :.: :...: CCDS60 DTLTPNCCPVCREISQQMYFKRIIFAEKQVIPTRESVPCQLSSSAMLICRRHQEIKNLIC 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR :.::::::.:::.: .: :.: .. : : . .::: .:.:.:.: .:::::: ::. CCDS60 ETDRSLLCFLCSQSPRHATHKHYMTREADEYYRKKLLIQMKSIWKKKQKNQRNLNRETNI 110 120 130 140 150 160 190 200 210 220 pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF :. :..: : :: . ..:. CCDS60 IGTWEVF--INLRSMMISAEYPKVCQYLREEEQKHVESLAREGRIIFQQLKRSQTRMAKM 170 180 190 200 210 220 224 residues in 1 query sequences 18921897 residues in 33420 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Jul 3 20:42:17 2020 done: Fri Jul 3 20:42:17 2020 Total Scan time: 1.040 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]