FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2713, 319 aa 1>>>pF1KE2713 319 - 319 aa - 319 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.0193+/-0.000803; mu= 6.1504+/- 0.049 mean_var=171.0926+/-34.838, 0's: 0 Z-trim(114.7): 3 B-trim: 371 in 1/52 Lambda= 0.098052 statistics sampled from 15209 (15212) to 15209 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.467), width: 16 Scan time: 1.400 The best scores are: opt bits E(32554) CCDS35142.1 MVB12B gene_id:89853|Hs108|chr9 ( 319) 2170 318.1 5.7e-87 CCDS48022.1 MVB12B gene_id:89853|Hs108|chr9 ( 221) 1521 226.2 1.8e-59 CCDS12359.1 MVB12A gene_id:93343|Hs108|chr19 ( 273) 545 88.2 8e-18 >>CCDS35142.1 MVB12B gene_id:89853|Hs108|chr9 (319 aa) initn: 2170 init1: 2170 opt: 2170 Z-score: 1674.9 bits: 318.1 E(32554): 5.7e-87 Smith-Waterman score: 2170; 100.0% identity (100.0% similar) in 319 aa overlap (1-319:1-319) 10 20 30 40 50 60 pF1KE2 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPRHISLTLPATFRGRNSTRTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPRHISLTLPATFRGRNSTRTD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 YEYQHSNLYAISAMDGVPFMISEKFSCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 YEYQHSNLYAISAMDGVPFMISEKFSCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQ 250 260 270 280 290 300 310 pF1KE2 SAAARLPPSPTRCQQIPQS ::::::::::::::::::: CCDS35 SAAARLPPSPTRCQQIPQS 310 >>CCDS48022.1 MVB12B gene_id:89853|Hs108|chr9 (221 aa) initn: 1521 init1: 1521 opt: 1521 Z-score: 1181.0 bits: 226.2 E(32554): 1.8e-59 Smith-Waterman score: 1521; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221) 10 20 30 40 50 60 pF1KE2 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPRHISLTLPATFRGRNSTRTD ::::::::::::::::::::::::::::::::::::::::: CCDS48 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPR 190 200 210 220 250 260 270 280 290 300 pF1KE2 YEYQHSNLYAISAMDGVPFMISEKFSCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQ >>CCDS12359.1 MVB12A gene_id:93343|Hs108|chr19 (273 aa) initn: 481 init1: 198 opt: 545 Z-score: 433.5 bits: 88.2 E(32554): 8e-18 Smith-Waterman score: 545; 35.6% identity (68.0% similar) in 278 aa overlap (40-309:2-271) 10 20 30 40 50 60 pF1KE2 SRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRNRAPTGYDVV . .: :. :..:.. .. : :.... CCDS12 MDPVPGTDSAPLAGLAWSSASAPPPRGFSAI 10 20 30 70 80 90 100 110 120 pF1KE2 AQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIKDTLPVGFIP . :..:. :.. :. : .: .::.. : :: . ::..:.... :. ::.:: : CCDS12 SCTVEGAPASFGKS--FAQKSGYFLCLSSLGSLENPQE-NVVADIQIVVDKSPLPLGFSP 40 50 60 70 80 130 140 150 160 170 180 pF1KE2 IQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIGELNSMGIWY . . .:.. . .:::.:.:..: .:..:. :.:. :.:: .: : ::......:: CCDS12 VCDPMDSKASVSKKKRMCVKLLPLGATDTAVFDVRLSGKTKTVPG-YLRIGDMGGFAIWC 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE2 RMGRVPRNHDSSQPTTPSQS-SAASTPAPNLPRHISLTLPATFR--GRNST--RTDYEYQ . ...:: .: :.. .. : : . : . .: .. : .: :: :.: :. CCDS12 KKAKAPR--PVPKPRGLSRDMQGLSLDAASQPSKGGLLERTASRLGSRASTLRRNDSIYE 150 160 170 180 190 200 250 260 270 280 290 300 pF1KE2 HSNLYAISAMDGVPFMISEKF---SCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQS :.::.::::::::: . .: :: : ... : .::::::.::.::.:.: .:.. CCDS12 ASSLYGISAMDGVPFTLHPRFEGKSCSPLAFSAFG--DLTIKSLADIEEEYNYGFVVEKT 210 220 230 240 250 260 310 pF1KE2 AAARLPPSPTRCQQIPQS :::::::: CCDS12 AAARLPPSVS 270 319 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Jan 30 11:04:19 2018 done: Tue Jan 30 11:04:19 2018 Total Scan time: 1.400 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]