FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2650, 865 aa
  1>>>pF1KE2650     865 - 865 aa - 865 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8029+/-0.00152; mu= 1.9617+/- 0.092
 mean_var=294.0435+/-59.515, 0's: 0 Z-trim(106.7): 52  B-trim: 228 in 1/51
 Lambda= 0.074794
 statistics sampled from 9138 (9153) to 9138 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.281), width:  16
 Scan time:  3.880

The best scores are:                                      opt bits E(32554)
CCDS619.1 L1TD1 gene_id:54596|Hs108|chr1           ( 865) 5454 603.3 5.8e-172


>>CCDS619.1 L1TD1 gene_id:54596|Hs108|chr1                (865 aa)
 initn: 5454 init1: 5454 opt: 5454  Z-score: 3200.7  bits: 603.3 E(32554): 5.8e-172
Smith-Waterman score: 5454; 99.8% identity (100.0% similar) in 865 aa overlap (1-865:1-865)

               10        20        30        40        50        60
pF1KE2 MSDVSTSVQSKFARLAKKKENITYMKREQLTETDKDIAPVLDLKCKDVSAIMNKFKVLME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MSDVSTSVQSKFARLAKKKENITYMKREQLTETDKDIAPVLDLKCKDVSAIMNKFKVLME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 IQDLMFEEMRETLKNDLKAVLGGKATIPEVKNSENSSSRTEFQQIINLALQKTGMVGKIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 IQDLMFEEMRETLKNDLKAVLGGKATIPEVKNSENSSSRTEFQQIINLALQKTGMVGKIE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GENSKIGDDNENLTFKLEVNELSGKLDNTNEYNSNDGKKLPQGESRSYEVMGSMEETLCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 GENSKIGDDNENLTFKLEVNELSGKLDNTNEYNSNDGKKLPQGESRSYEVMGSMEETLCN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 IDDRDGNRNVHLEFTERESRKDGEDEFVKEMREERKFQKLKNKEEVLKASREEKVLMDEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 IDDRDGNRNVHLEFTERESRKDGEDEFVKEMREERKFQKLKNKEEVLKASREEKVLMDEG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 AVLTLAADLSSATLDISKQWSNVFNILRENDFEPKFLCEVKLAFKCDGEIKTFSDLQSLR
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 AVLTLVADLSSATLDISKQWSNVFNILRENDFEPKFLCEVKLAFKCDGEIKTFSDLQSLR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 KFASQKSSMKELLKDVLPQKEEINQGGRKYGIQEKRDKTLIDSKHRAGEITSDGLSFLFL
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 KFASQKSSVKELLKDVLPQKEEINQGGRKYGIQEKRDKTLIDSKHRAGEITSDGLSFLFL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 KEVKVAKPEEMKNLETQEEEFSELEELDEEASGMEDDEDTSGLEEEEEEPSGLEEEEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 KEVKVAKPEEMKNLETQEEEFSELEELDEEASGMEDDEDTSGLEEEEEEPSGLEEEEEEE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 ASGLEEDEASGLEEEEEQTSEQDSTFQGHTLVDAKHEVEITSDGMETTFIDSVEDSESEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ASGLEEDEASGLEEEEEQTSEQDSTFQGHTLVDAKHEVEITSDGMETTFIDSVEDSESEE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 EEEGKSSETGKVKTTSLTEKKASRRQKEIPFSYLVGDSGKKKLVKHQVVHKTQEEEETAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 EEEGKSSETGKVKTTSLTEKKASRRQKEIPFSYLVGDSGKKKLVKHQVVHKTQEEEETAV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 PTSQGTGTPCLTLCLASPSKSLEMSHDEHKKHSHTNLSISTGVTKLKKTEEKKHRTLHTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PTSQGTGTPCLTLCLASPSKSLEMSHDEHKKHSHTNLSISTGVTKLKKTEEKKHRTLHTE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 ELTSKEADLTEETEENLRSSVINSIREIKEEIGNLKSSHSGVLEIENSVDDLSSRMDILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ELTSKEADLTEETEENLRSSVINSIREIKEEIGNLKSSHSGVLEIENSVDDLSSRMDILE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE2 ERIDSLEDQIEEFSKDTMQMTKQIISKERQRDIEERSRSCNIRLIGIPEKESYENRAEDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ERIDSLEDQIEEFSKDTMQMTKQIISKERQRDIEERSRSCNIRLIGIPEKESYENRAEDI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE2 IKEIIDENFAELKKGSSLEIVSACRVPSKIDEKRLTPRHILVKFWNSSDKEKIIRASRER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 IKEIIDENFAELKKGSSLEIVSACRVPSKIDEKRLTPRHILVKFWNSSDKEKIIRASRER
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE2 REITYQGTRIRLTADLSLDTLDARSKWSNVFKVLLEKGFNPRILYPAKMAFDFRGKTKVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 REITYQGTRIRLTADLSLDTLDARSKWSNVFKVLLEKGFNPRILYPAKMAFDFRGKTKVF
              790       800       810       820       830       840

              850       860     
pF1KE2 LSIEEFRDYVLHMPTLRELLGNNIP
       :::::::::::::::::::::::::
CCDS61 LSIEEFRDYVLHMPTLRELLGNNIP
              850       860     




865 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov 16 15:02:44 2016 done: Wed Nov 16 15:02:45 2016
 Total Scan time:  3.880 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]