(Circular) (Six-base) MAPSORT of: pFN21AE2677.seq Check: 6207 from: 1 to: 10165 pFN21AE2677 10165 bp With 182 enzymes: SgfI * May 15, 2018 21:51 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 7975 278 Size: 53 83 186 936 6439 2468 Fragments arranged by size: 6439 2468 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2567 7508 1937 Size: 630 4941 4594 Fragments arranged by size: 4941 4594 630 Acc65I G'GTAC_C Cuts at: 7486 7486 Size: 10165 AclI AA'CG_TT Cuts at: 1563 8292 8665 1563 Size: 6729 373 3063 Fragments arranged by size: 6729 3063 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2064 3651 4023 4505 4599 5612 5822 8228 Size: 432 1587 372 482 94 1013 210 2406 Cuts at: 8228 9612 9880 1632 Size: 1384 268 1917 Fragments arranged by size: 2406 1917 1587 1384 1013 482 432 372 268 210 94 AfeI AGC'GCT Cuts at: 5448 5448 Size: 10165 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 9968 AflIII A'CryG_T Cuts at: 1203 4846 9064 10041 1203 Size: 3643 4218 977 1327 Fragments arranged by size: 4218 3643 1327 977 AgeI A'CCGG_T Cuts at: 8996 8996 Size: 10165 AhdI GACnn_n'nnGTC Cuts at: 8894 8894 Size: 10165 AleI CACnn'nnGTG Cuts at: 1166 3015 6311 6938 1166 Size: 1849 3296 627 4393 Fragments arranged by size: 4393 3296 1849 627 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 10165 AlwNI CAG_nnn'CTG Cuts at: 5374 5824 6734 7908 9480 5374 Size: 450 910 1174 1572 6059 Fragments arranged by size: 6059 1572 1174 910 450 ApaLI G'TGCA_C Cuts at: 8222 9378 8222 Size: 1156 9009 ApoI r'AATT_y Cuts at: 1493 2089 2123 2339 2384 2807 2835 2882 3351 Size: 596 34 216 45 423 28 47 469 Cuts at: 3351 3460 3797 3804 4349 4780 4809 5133 5155 Size: 109 337 7 545 431 29 324 22 Cuts at: 5155 5602 5612 6774 7046 7069 7199 7356 7474 Size: 447 10 1162 272 23 130 157 118 Cuts at: 7474 7700 7852 9961 1493 Size: 226 152 2109 1697 Fragments arranged by size: 2109 1697 1162 596 545 469 447 431 423 337 324 272 226 216 157 152 130 118 109 47 45 34 29 28 23 22 10 7 AseI AT'TA_AT Cuts at: 160 1032 4196 4955 5964 8719 160 Size: 872 3164 759 1009 2755 1606 Fragments arranged by size: 3164 2755 1606 1009 872 759 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 10165 AvaI C'yCGr_G Cuts at: 1870 1943 3957 7490 1870 Size: 73 2014 3533 4545 Fragments arranged by size: 4545 3533 2014 73 BamHI G'GATC_C Cuts at: 7495 7862 7495 Size: 367 9798 BanI G'GyrC_C Cuts at: 618 943 1160 1787 7486 8941 618 Size: 325 217 627 5699 1455 1842 Fragments arranged by size: 5699 1842 1455 627 325 217 BanII G_rGCy'C Cuts at: 1391 3847 7274 7484 1391 Size: 2456 3427 210 4072 Fragments arranged by size: 4072 3427 2456 210 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2183 2543 3176 3603 3753 4587 4635 Size: 971 284 360 633 427 150 834 48 Cuts at: 4635 6135 928 Size: 1500 4958 Fragments arranged by size: 4958 1500 971 834 633 427 360 284 150 48 BbvCI CC'TCA_GC Cuts at: 6468 6468 Size: 10165 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 8356 8390 1903 Size: 34 6419 34 3678 Fragments arranged by size: 6419 3678 34 34 BciVI GTATCCnnnnn_n' Cuts at: 8057 9267 8057 Size: 1210 8955 BclI T'GATC_A Cuts at: 1548 4324 6841 7420 1548 Size: 2776 2517 579 4293 Fragments arranged by size: 4293 2776 2517 579 BfrBI ATG'CAT Cuts at: 2292 2292 Size: 10165 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 8776 136 Size: 107 122 71 631 605 7104 1525 Fragments arranged by size: 7104 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2944 5833 6100 10160 2944 Size: 2889 267 4060 2949 Fragments arranged by size: 4060 2949 2889 267 BlpI GC'TnA_GC Cuts at: 7582 7582 Size: 10165 Bme1580I G_kGCm'C Cuts at: 1790 8226 9382 1790 Size: 6436 1156 2573 Fragments arranged by size: 6436 2573 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 10165 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3213 7896 8854 Size: 416 53 83 399 24 1796 4683 958 Cuts at: 8854 442 Size: 1753 Fragments arranged by size: 4683 1796 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 2649 1056 Size: 1593 8572 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 5812 5812 Size: 10165 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2165 5993 8825 1239 Size: 926 3828 2832 2579 Fragments arranged by size: 3828 2832 2579 926 Bpu10I CC'TnA_GC Cuts at: 2320 6468 2320 Size: 4148 6017 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2249 3453 3486 4280 5657 6020 6209 6402 8290 Size: 1204 33 794 1377 363 189 193 1888 Cuts at: 8290 9155 9453 2249 Size: 865 298 2961 Fragments arranged by size: 2961 1888 1377 1204 865 794 363 298 193 189 33 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 8828 882 Size: 617 7329 2219 Fragments arranged by size: 7329 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 4982 7956 493 Size: 711 3778 2974 2702 Fragments arranged by size: 3778 2974 2702 711 BsaBI GATnn'nnATC Cuts at: 6410 10159 6410 Size: 3749 6416 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 7972 8354 8989 275 Size: 53 83 186 936 6439 382 635 1451 Fragments arranged by size: 6439 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 8598 8996 9270 9417 9828 8598 Size: 398 274 147 411 8935 Fragments arranged by size: 8935 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 9940 Fragments arranged by size: 9940 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 3629 3731 5069 7004 1186 Size: 2443 102 1338 1935 4347 Fragments arranged by size: 4347 2443 1935 1338 102 BseYI C'CCAG_C Cuts at: 2365 6522 9368 9864 2365 Size: 4157 2846 496 2666 Fragments arranged by size: 4157 2846 2666 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 4871 1163 Size: 573 3135 6457 Fragments arranged by size: 6457 3135 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 4610 7615 8376 9404 1540 Size: 275 186 2609 3005 761 1028 2301 Fragments arranged by size: 3005 2609 2301 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 7274 8226 8311 9382 7274 Size: 952 85 1071 8057 Fragments arranged by size: 8057 1071 952 85 BsmI GAATG_Cn' Cuts at: 2514 7027 7676 7769 2514 Size: 4513 649 93 4910 Fragments arranged by size: 4910 4513 649 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 3847 7274 7484 8226 8311 9382 1391 Size: 399 2057 3427 210 742 85 1071 2174 Fragments arranged by size: 3427 2174 2057 1071 742 399 210 85 BspEI T'CCGG_A Cuts at: 9828 9828 Size: 10165 BspHI T'CATG_A Cuts at: 2119 4887 8054 9784 2119 Size: 2768 3167 1730 2500 Fragments arranged by size: 3167 2768 2500 1730 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 7520 844 Size: 6676 3489 BsrBI CCG'CTC Cuts at: 1394 1823 8052 1394 Size: 429 6229 3507 Fragments arranged by size: 6229 3507 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2657 3426 4399 4614 6259 8660 8834 Size: 1183 1409 769 973 215 1645 2401 174 Cuts at: 8834 65 Size: 1396 Fragments arranged by size: 2401 1645 1409 1396 1183 973 769 215 174 BsrFI r'CCGG_y Cuts at: 1700 1810 8809 8996 1700 Size: 110 6999 187 2869 Fragments arranged by size: 6999 2869 187 110 BsrGI T'GTAC_A Cuts at: 96 6625 96 Size: 6529 3636 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 10165 BssSI C'ACGA_G Cuts at: 3108 3713 8225 9237 3108 Size: 605 4512 1012 4036 Fragments arranged by size: 4512 4036 1012 605 BstAPI GCAn_nnn'nTGC Cuts at: 794 5807 794 Size: 5013 5152 BstBI TT'CG_AA Cuts at: 2163 2194 7447 8969 2163 Size: 31 5253 1522 3359 Fragments arranged by size: 5253 3359 1522 31 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 10165 BstXI CCAn_nnnn'nTGG Cuts at: 6229 6229 Size: 10165 BstYI r'GATC_y Cuts at: 1972 2594 2944 5035 5833 6100 6730 6800 7495 Size: 622 350 2091 798 267 630 70 695 Cuts at: 7495 7862 8247 8264 9716 9802 9814 10160 1972 Size: 367 385 17 1452 86 12 346 1977 Fragments arranged by size: 2091 1977 1452 798 695 630 622 385 367 350 346 267 86 70 17 12 BstZ17I GTA'TAC Cuts at: 2568 2568 Size: 10165 Bsu36I CC'TnA_GG Cuts at: 4464 4464 Size: 10165 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 8674 Fragments arranged by size: 8674 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 9426 Fragments arranged by size: 9426 683 56 BtsI GCAGTG_nn' Cuts at: 6918 7681 8475 8495 6918 Size: 763 794 20 8588 Fragments arranged by size: 8588 794 763 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 10165 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 3976 4011 529 Size: 35 3412 35 6683 Fragments arranged by size: 6683 3412 35 35 DraI TTT'AAA Cuts at: 2994 3459 3802 4387 5658 7469 2994 Size: 465 343 585 1271 1811 5690 Fragments arranged by size: 5690 1811 1271 585 465 343 DraIII CAC_nnn'GTG Cuts at: 5468 5468 Size: 10165 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2439 9172 809 Size: 507 1123 6733 1802 Fragments arranged by size: 6733 1802 1123 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 6219 7167 7612 Size: 54 1425 50 275 18 4389 948 445 Cuts at: 7612 8501 10130 8 Size: 889 1629 43 Fragments arranged by size: 4389 1629 1425 948 889 445 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 7612 1537 Size: 275 5800 4090 Fragments arranged by size: 5800 4090 275 EarI CTCTTCn'nnn_ Cuts at: 1353 4053 4116 4206 5221 6962 6968 7279 8095 Size: 2700 63 90 1015 1741 6 311 816 Cuts at: 8095 1353 Size: 3423 Fragments arranged by size: 3423 2700 1741 1015 816 311 90 63 6 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3412 8752 9126 9272 387 Size: 1064 138 1823 5340 374 146 1280 Fragments arranged by size: 5340 1823 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 7272 7272 Size: 10165 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2064 2165 3651 4023 4505 4599 5612 Size: 393 432 101 1486 372 482 94 1013 Cuts at: 5612 5822 5993 8228 8825 9612 9880 1239 Size: 210 171 2235 597 787 268 1524 Fragments arranged by size: 2235 1524 1486 1013 787 597 482 432 393 372 268 210 171 101 94 EcoRI G'AATT_C Cuts at: 2384 5133 7474 7852 2384 Size: 2749 2341 378 4697 Fragments arranged by size: 4697 2749 2341 378 EcoRV GAT'ATC Cuts at: 6615 6703 6615 Size: 88 10077 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2404 5378 5642 5852 2404 Size: 2974 264 210 6717 Fragments arranged by size: 6717 2974 264 210 FspI TGC'GCA Cuts at: 8671 8671 Size: 10165 HaeII r_GCGC'y Cuts at: 1678 5450 9312 1678 Size: 3772 3862 2531 Fragments arranged by size: 3862 3772 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4182 4214 4460 4492 6785 Size: 32 135 32 2610 32 246 32 2293 Cuts at: 6785 6792 6817 6824 8806 8838 8880 8912 1373 Size: 7 25 7 1982 32 42 32 2626 Fragments arranged by size: 2626 2610 2293 1982 246 135 42 32 32 32 32 32 32 25 7 7 HincII GTy'rAC Cuts at: 669 1657 1938 5700 6831 7509 7755 669 Size: 988 281 3762 1131 678 246 3079 Fragments arranged by size: 3762 3079 1131 988 678 281 246 HindIII A'AGCT_T Cuts at: 748 2105 748 Size: 1357 8808 HpaI GTT'AAC Cuts at: 5700 7755 5700 Size: 2055 8110 KpnI G_GTAC'C Cuts at: 7490 7490 Size: 10165 MfeI C'AATT_G Cuts at: 2067 4833 7764 2067 Size: 2766 2931 4468 Fragments arranged by size: 4468 2931 2766 MluI A'CGCG_T Cuts at: 10041 10041 Size: 10165 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 3714 4828 9279 9463 1305 Size: 2409 1114 4451 184 2007 Fragments arranged by size: 4451 2409 2007 1114 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 6221 7169 10 Size: 54 1425 343 4389 948 3006 Fragments arranged by size: 4389 3006 1425 948 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3015 4017 4387 6137 6311 6938 8123 Size: 648 1849 1002 370 1750 174 627 1185 Cuts at: 8123 8482 8641 518 Size: 359 159 2042 Fragments arranged by size: 2042 1849 1750 1185 1002 648 627 370 359 174 159 MspA1I CmG'CkG Cuts at: 1606 5374 6526 7581 8258 9406 9651 1606 Size: 3768 1152 1055 677 1148 245 2120 Fragments arranged by size: 3768 2120 1152 1148 1055 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 8674 Fragments arranged by size: 8674 939 552 NdeI CA'TA_TG Cuts at: 387 4371 387 Size: 3984 6181 NheI G'CTAG_C Cuts at: 1052 2645 1052 Size: 1593 8572 NotI GC'GGCC_GC Cuts at: 7612 7612 Size: 10165 NsiI A_TGCA'T Cuts at: 2294 2294 Size: 10165 NspI r_CATG'y Cuts at: 1132 1229 3290 4850 5429 6096 6136 7523 9068 Size: 97 2061 1560 579 667 40 1387 1545 Cuts at: 9068 1132 Size: 2229 Fragments arranged by size: 2229 2061 1560 1545 1387 667 579 97 40 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 10165 PciI A'CATG_T Cuts at: 4846 9064 4846 Size: 4218 5947 PflMI CCAn_nnn'nTGG Cuts at: 1108 3567 1108 Size: 2459 7706 PfoI T'CCnGG_A Cuts at: 3297 3297 Size: 10165 PmeI GTTT'AAAC Cuts at: 7469 7469 Size: 10165 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 8234 8266 9747 9779 8234 Size: 32 1481 32 8620 Fragments arranged by size: 8620 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 10165 PsiI TTA'TAA Cuts at: 2939 7735 2939 Size: 4796 5369 PstI C_TGCA'G Cuts at: 830 7517 830 Size: 6687 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 10165 PvuII CAG'CTG Cuts at: 5374 6526 5374 Size: 1152 9013 SacI G_AGCT'C Cuts at: 7274 7274 Size: 10165 SalI G'TCGA_C Cuts at: 1936 7507 1936 Size: 5571 4594 SapI GCTCTTCn'nnn_ Cuts at: 7279 7279 Size: 10165 SbfI CC_TGCA'GG Cuts at: 7517 7517 Size: 10165 ScaI AGT'ACT Cuts at: 8413 10125 8413 Size: 1712 8453 SfcI C'TryA_G Cuts at: 826 1045 2983 6804 7193 7513 8648 9329 9520 Size: 219 1938 3821 389 320 1135 681 191 Cuts at: 9520 826 Size: 1471 Fragments arranged by size: 3821 1938 1471 1135 681 389 320 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 10165 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 10165 SmaI CCC'GGG Cuts at: 1872 7492 1872 Size: 5620 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2228 3468 3501 3957 4259 5672 Size: 197 926 285 1240 33 456 302 1413 Cuts at: 5672 6035 6188 6417 8269 9170 9432 820 Size: 363 153 229 1852 901 262 1553 Fragments arranged by size: 1852 1553 1413 1240 926 901 456 363 302 285 262 229 197 153 33 SnaBI TAC'GTA Cuts at: 493 4982 7956 493 Size: 4489 2974 2702 Fragments arranged by size: 4489 2974 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 10165 SphI G_CATG'C Cuts at: 1132 6096 7523 1132 Size: 4964 1427 3774 Fragments arranged by size: 4964 3774 1427 SspI AAT'ATT Cuts at: 5 52 2509 3081 3540 8089 5 Size: 47 2457 572 459 4549 2081 Fragments arranged by size: 4549 2457 2081 572 459 47 StuI AGG'CCT Cuts at: 1517 2077 5213 1517 Size: 560 3136 6469 Fragments arranged by size: 6469 3136 560 StyI C'CwwG_G Cuts at: 513 1065 2004 2296 2352 3792 6957 7604 513 Size: 552 939 292 56 1440 3165 647 3074 Fragments arranged by size: 3165 3074 1440 939 647 552 292 56 SwaI ATTT'AAAT Cuts at: 4387 5658 4387 Size: 1271 8894 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 4624 7045 8192 8209 8362 8547 8992 Size: 1255 3044 2421 1147 17 153 185 445 Cuts at: 8992 325 Size: 1498 Fragments arranged by size: 3044 2421 1498 1255 1147 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 5908 6625 8411 Size: 274 80 33 51 1443 3931 717 1786 Cuts at: 8411 10123 96 Size: 1712 138 Fragments arranged by size: 3931 1786 1712 1443 717 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 6841 6873 10125 10157 6841 Size: 32 3252 32 6849 Fragments arranged by size: 6849 3252 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 2436 1316 Size: 1120 9045 XbaI T'CTAG_A Cuts at: 3580 7501 3580 Size: 3921 6244 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2788 2788 Size: 10165 XhoI C'TCGA_G Cuts at: 1943 3957 1943 Size: 2014 8151 XmaI C'CCGG_G Cuts at: 1870 7490 1870 Size: 5620 4545 XmnI GAAnn'nnTTC Cuts at: 2384 2388 5625 7072 8294 2384 Size: 4 3237 1447 1222 4255 Fragments arranged by size: 4255 3237 1447 1222 4 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 7973 276 Size: 53 83 186 936 6439 2468 Fragments arranged by size: 6439 2468 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BstZ17I Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoRI EcoRV FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NsiI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PstI PvuI PvuII SacI SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI SwaI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BsiWI BsmBI EcoNI EcoO109I FseI FspAI KasI NaeI NarI NgoMIV NruI PacI PmlI PpuMI PspOMI PspXI PsrI RsrII SacII SanDI SexAI SfiI SfoI SrfI