FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5904, 525 aa 1>>>pF1KB5904 525 - 525 aa - 525 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.7556+/-0.000975; mu= 5.3596+/- 0.059 mean_var=272.6446+/-55.270, 0's: 0 Z-trim(115.1): 46 B-trim: 350 in 1/51 Lambda= 0.077674 statistics sampled from 15656 (15701) to 15656 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.482), width: 16 Scan time: 1.670 The best scores are: opt bits E(32554) CCDS3280.1 HRG gene_id:3273|Hs108|chr3 ( 525) 3912 451.6 1e-126 >>CCDS3280.1 HRG gene_id:3273|Hs108|chr3 (525 aa) initn: 3912 init1: 3912 opt: 3912 Z-score: 2388.4 bits: 451.6 E(32554): 1e-126 Smith-Waterman score: 3912; 99.4% identity (99.6% similar) in 525 aa overlap (1-525:1-525) 10 20 30 40 50 60 pF1KB5 MKALIAALLLITLQYSCAVSPTDCSAVEPEAEKALDLINKRRRDGYLFQLLRIADAHLDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MKALIAALLLITLQYSCAVSPTDCSAVEPEAEKALDLINKRRRDGYLFQLLRIADAHLDR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 VENTTVYYLVLDVQESDCSVLSRKYWNDCEPPDSRRPSEIVIGQCKVIATRHSHESQDLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VENTTVYYLVLDVQESDCSVLSRKYWNDCEPPDSRRPSEIVIGQCKVIATRHSHESQDLR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 VIDFNCTTSSVSSALANTKDSPVLIDFFEDTERYRKQANKALEKYKEENDDFASFRVDRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VIDFNCTTSSVSSALANTKDSPVLIDFFEDTERYRKQANKALEKYKEENDDFASFRVDRI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 ERVARVRGGEGTGYFVDFSVRNCSRHHFPRHPNVFGFCRADLFYDVEALDLESPKNLVIN ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: CCDS32 ERVARVRGGEGTGYFVDFSVRNCPRHHFPRHPNVFGFCRADLFYDVEALDLESPKNLVIN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 CEVFDPQEHENINGVPPHLGHPFHWGGHERSSTTKPPFKPHGSRDHHHPHKPHEHGPPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 CEVFDPQEHENINGVPPHLGHPFHWGGHERSSTTKPPFKPHGSRDHHHPHKPHEHGPPPP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 PDERDHSHGPPLPQGPPPLLPMSCSSCQHATFGTNGAQRRSHNNNSSDLHPHKHHSHEQH :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: CCDS32 PDERDHSHGPPLPQGPPPLLPMSCSSCQHATFGTNGAQRHSHNNNSSDLHPHKHHSHEQH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 PHGHHPHAHHPHEHDTHRQHPHGHHPHGHHPHGHHPHGHHPHGHHPHCHDFQDYGPCDPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PHGHHPHAHHPHEHDTHRQHPHGHHPHGHHPHGHHPHGHHPHGHHPHCHDFQDYGPCDPP 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 PHNQGHCCHGHGPPPGHLRRRGPGKGPRPFHCRQIGSVYRLPPLRKGEVLPLPEANFPSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PHNQGHCCHGHGPPPGHLRRRGPGKGPRPFHCRQIGSVYRLPPLRKGEVLPLPEANFPSF 430 440 450 460 470 480 490 500 510 520 pF1KB5 PLPHHKHPLKPDIQPFPQSVSESCPGKFKSGFPQVSMFFTHTFPK :::::::::::: :::::::::::::::::::::::::::::::: CCDS32 PLPHHKHPLKPDNQPFPQSVSESCPGKFKSGFPQVSMFFTHTFPK 490 500 510 520 525 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Jan 30 11:05:00 2018 done: Tue Jan 30 11:05:00 2018 Total Scan time: 1.670 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]