FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2624, 260 aa
  1>>>pF1KE2624 260 - 260 aa - 260 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2517+/-0.000707; mu= 15.0941+/- 0.042
 mean_var=64.3006+/-13.028, 0's: 0 Z-trim(109.3): 3  B-trim: 0 in 0/51
 Lambda= 0.159944
 statistics sampled from 10803 (10804) to 10803 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.332), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS12252.1 TIMM29 gene_id:90580|Hs108|chr19       ( 260) 1767 416.0 1.3e-116


>>CCDS12252.1 TIMM29 gene_id:90580|Hs108|chr19            (260 aa)
 initn: 1767 init1: 1767 opt: 1767  Z-score: 2206.9  bits: 416.0 E(32554): 1.3e-116
Smith-Waterman score: 1767; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)

               10        20        30        40        50        60
pF1KE2 MAAAALRRFWSRRRAEAGDAVVAKPGVWARLGSWARALLRDYAEACRDASAEARARPGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAAAALRRFWSRRRAEAGDAVVAKPGVWARLGSWARALLRDYAEACRDASAEARARPGRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 AVYVGLLGGAAACFTLAPSEGAFEEALLEASGTLLLLAPATRNRESEAFVQRLLWLRGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AVYVGLLGGAAACFTLAPSEGAFEEALLEASGTLLLLAPATRNRESEAFVQRLLWLRGRG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 RLRYVNLGLCSLVYEAPFDAQASLYQARCRYLQPRWTDFPGRVLDVGFVGRWWVLGAWMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RLRYVNLGLCSLVYEAPFDAQASLYQARCRYLQPRWTDFPGRVLDVGFVGRWWVLGAWMR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 DCDINDDEFLHLPAHLRVVGPQQLHSETNERLFDEKYKPVVLTDDQVDQALWEEQVLQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DCDINDDEFLHLPAHLRVVGPQQLHSETNERLFDEKYKPVVLTDDQVDQALWEEQVLQKE
              190       200       210       220       230       240

              250       260
pF1KE2 KKDRLALSQAHSLVQAEAPR
       ::::::::::::::::::::
CCDS12 KKDRLALSQAHSLVQAEAPR
              250       260




260 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:47:39 2016 done: Sat Nov  5 22:47:39 2016
 Total Scan time:  2.510 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]