FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9275, 268 aa 1>>>pF1KE9275 268 - 268 aa - 268 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 13.4470+/-0.000359; mu= -21.0374+/- 0.023 mean_var=409.0906+/-82.877, 0's: 0 Z-trim(126.1): 10 B-trim: 0 in 0/62 Lambda= 0.063411 statistics sampled from 51413 (51423) to 51413 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.603), width: 16 Scan time: 7.490 The best scores are: opt bits E(85289) NP_149074 (OMIM: 608315) ELL-associated factor 1 [ ( 268) 1816 178.9 8.7e-45 XP_011532467 (OMIM: 608315) PREDICTED: ELL-associa ( 167) 1069 110.4 2.2e-24 XP_011532468 (OMIM: 608315) PREDICTED: ELL-associa ( 167) 1069 110.4 2.2e-24 XP_005265575 (OMIM: 608315) PREDICTED: ELL-associa ( 167) 1069 110.4 2.2e-24 NP_060926 (OMIM: 607659) ELL-associated factor 2 i ( 260) 667 73.8 3.7e-13 XP_016862352 (OMIM: 607659) PREDICTED: ELL-associa ( 263) 667 73.8 3.8e-13 XP_005247675 (OMIM: 607659) PREDICTED: ELL-associa ( 271) 532 61.4 2e-09 NP_001306970 (OMIM: 607659) ELL-associated factor ( 130) 292 39.3 0.0044 XP_016862351 (OMIM: 607659) PREDICTED: ELL-associa ( 130) 292 39.3 0.0044 XP_016862350 (OMIM: 607659) PREDICTED: ELL-associa ( 130) 292 39.3 0.0044 >>NP_149074 (OMIM: 608315) ELL-associated factor 1 [Homo (268 aa) initn: 1816 init1: 1816 opt: 1816 Z-score: 925.0 bits: 178.9 E(85289): 8.7e-45 Smith-Waterman score: 1816; 99.3% identity (100.0% similar) in 268 aa overlap (1-268:1-268) 10 20 30 40 50 60 pF1KE9 MNGTANPLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 MNGTANPLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVTI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 TLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEFVLEKLSSSIQVKKTRAEGSSKIQ ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: NP_149 TLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEYVLEKLSSSIQVKKTRAEGSSKIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 ARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 ARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 VDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 VDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGT 190 200 210 220 230 240 250 260 pF1KE9 SRPQGSNQLMNALRNDLQLSESGSDSDD :::::::::::.:::::::::::::::: NP_149 SRPQGSNQLMNTLRNDLQLSESGSDSDD 250 260 >>XP_011532467 (OMIM: 608315) PREDICTED: ELL-associated (167 aa) initn: 1063 init1: 1063 opt: 1069 Z-score: 558.8 bits: 110.4 E(85289): 2.2e-24 Smith-Waterman score: 1069; 93.4% identity (98.2% similar) in 167 aa overlap (102-268:1-167) 80 90 100 110 120 130 pF1KE9 MTVFKGNKRPYQKDCVLIINHDTGEFVLEKLSSSIQVKKTRAEGSSKIQARMEQQPTRPP ..:... . . ::::::::::::::::::: XP_011 MKSQLHCHISLAEGSSKIQARMEQQPTRPP 10 20 30 140 150 160 170 180 190 pF1KE9 QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSS 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE9 GSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSNQLMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSNQLMN 100 110 120 130 140 150 260 pF1KE9 ALRNDLQLSESGSDSDD .:::::::::::::::: XP_011 TLRNDLQLSESGSDSDD 160 >>XP_011532468 (OMIM: 608315) PREDICTED: ELL-associated (167 aa) initn: 1063 init1: 1063 opt: 1069 Z-score: 558.8 bits: 110.4 E(85289): 2.2e-24 Smith-Waterman score: 1069; 93.4% identity (98.2% similar) in 167 aa overlap (102-268:1-167) 80 90 100 110 120 130 pF1KE9 MTVFKGNKRPYQKDCVLIINHDTGEFVLEKLSSSIQVKKTRAEGSSKIQARMEQQPTRPP ..:... . . ::::::::::::::::::: XP_011 MKSQLHCHISLAEGSSKIQARMEQQPTRPP 10 20 30 140 150 160 170 180 190 pF1KE9 QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSS 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE9 GSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSNQLMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSNQLMN 100 110 120 130 140 150 260 pF1KE9 ALRNDLQLSESGSDSDD .:::::::::::::::: XP_011 TLRNDLQLSESGSDSDD 160 >>XP_005265575 (OMIM: 608315) PREDICTED: ELL-associated (167 aa) initn: 1063 init1: 1063 opt: 1069 Z-score: 558.8 bits: 110.4 E(85289): 2.2e-24 Smith-Waterman score: 1069; 93.4% identity (98.2% similar) in 167 aa overlap (102-268:1-167) 80 90 100 110 120 130 pF1KE9 MTVFKGNKRPYQKDCVLIINHDTGEFVLEKLSSSIQVKKTRAEGSSKIQARMEQQPTRPP ..:... . . ::::::::::::::::::: XP_005 MKSQLHCHISLAEGSSKIQARMEQQPTRPP 10 20 30 140 150 160 170 180 190 pF1KE9 QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSS 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE9 GSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSNQLMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSNQLMN 100 110 120 130 140 150 260 pF1KE9 ALRNDLQLSESGSDSDD .:::::::::::::::: XP_005 TLRNDLQLSESGSDSDD 160 >>NP_060926 (OMIM: 607659) ELL-associated factor 2 isofo (260 aa) initn: 890 init1: 598 opt: 667 Z-score: 357.2 bits: 73.8 E(85289): 3.7e-13 Smith-Waterman score: 843; 54.5% identity (73.6% similar) in 277 aa overlap (1-268:1-260) 10 20 30 40 50 pF1KE9 MNGTAN-PLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVT ::..:. :::.:. :.:::::::.:: .:::.:::::::::::: :: :.::.:..:: NP_060 MNSAAGFSHLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVT 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 ITLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEFVLEKLSSSIQVKKTRAEGSSKI ::::.: :::::.:::::.:.:: :.:.::::::::: ::::::.: :::::.:::::: NP_060 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 QARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRA : : ::: . ... . : : :: .:. :: .:::.:::.: NP_060 QYRKEQQQQQMWNSA---------------RTPNLVKHSPSEDKMSPASPIDDIERELKA 130 140 150 160 180 190 200 210 220 230 pF1KE9 EVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGED-------NGPASPPQPSHQQPYNS :.....:::: ..::.: : :::.:.:.::.: :: .: .:. : : NP_060 EASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRI 170 180 190 200 210 220 240 250 260 pF1KE9 RPAVANGTSRPQ-GSNQLMNALRNDLQLSESGSDSDD : . . .: . .:. :::.:::::::::::::::: NP_060 -PDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD 230 240 250 260 >>XP_016862352 (OMIM: 607659) PREDICTED: ELL-associated (263 aa) initn: 890 init1: 598 opt: 667 Z-score: 357.1 bits: 73.8 E(85289): 3.8e-13 Smith-Waterman score: 752; 51.9% identity (72.0% similar) in 264 aa overlap (1-255:1-247) 10 20 30 40 50 pF1KE9 MNGTAN-PLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVT ::..:. :::.:. :.:::::::.:: .:::.:::::::::::: :: :.::.:..:: XP_016 MNSAAGFSHLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVT 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 ITLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEFVLEKLSSSIQVKKTRAEGSSKI ::::.: :::::.:::::.:.:: :.:.::::::::: ::::::.: :::::.:::::: XP_016 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 QARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRA : : ::: . ... . : : :: .:. :: .:::.:::.: XP_016 QYRKEQQQQQMWNSA---------------RTPNLVKHSPSEDKMSPASPIDDIERELKA 130 140 150 160 180 190 200 210 220 230 pF1KE9 EVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGED-------NGPASPPQPSHQQPYNS :.....:::: ..::.: : :::.:.:.::.: :: .: .:. : : XP_016 EASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRI 170 180 190 200 210 220 240 250 260 pF1KE9 RPAVANGTSRPQ-GSNQLMNALRNDLQLSESGSDSDD : . . .: . .:. :::.: : XP_016 -PDIDASHNRFRDNSGLLMNTLNNLSSHSFSSLYDPLLSH 230 240 250 260 >>XP_005247675 (OMIM: 607659) PREDICTED: ELL-associated (271 aa) initn: 758 init1: 466 opt: 532 Z-score: 290.1 bits: 61.4 E(85289): 2e-09 Smith-Waterman score: 708; 52.6% identity (71.3% similar) in 247 aa overlap (30-268:42-271) 10 20 30 40 50 pF1KE9 MNGTANPLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVT : .. :::::::::: :: :.::.:..:: XP_005 LSSVPFSGSVICVFIWFFHAFFSNSIYSLLFSSFSDDFKPASIDTSSEGYLEVGEGEQVT 20 30 40 50 60 70 60 70 80 90 100 110 pF1KE9 ITLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEFVLEKLSSSIQVKKTRAEGSSKI ::::.: :::::.:::::.:.:: :.:.::::::::: ::::::.: :::::.:::::: XP_005 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI 80 90 100 110 120 130 120 130 140 150 160 170 pF1KE9 QARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRA : : ::: . ... . : : :: .:. :: .:::.:::.: XP_005 QYRKEQQQQQMWNSA---------------RTPNLVKHSPSEDKMSPASPIDDIERELKA 140 150 160 170 180 190 200 210 220 230 pF1KE9 EVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGED-------NGPASPPQPSHQQPYNS :.....:::: ..::.: : :::.:.:.::.: :: .: .:. : : XP_005 EASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRI 180 190 200 210 220 230 240 250 260 pF1KE9 RPAVANGTSRPQ-GSNQLMNALRNDLQLSESGSDSDD : . . .: . .:. :::.:::::::::::::::: XP_005 -PDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD 240 250 260 270 >>NP_001306970 (OMIM: 607659) ELL-associated factor 2 is (130 aa) initn: 306 init1: 192 opt: 292 Z-score: 176.4 bits: 39.3 E(85289): 0.0044 Smith-Waterman score: 292; 46.5% identity (68.5% similar) in 127 aa overlap (150-268:6-130) 120 130 140 150 160 170 pF1KE9 QARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRA . : : :: .:. :: .:::.:::.: NP_001 MWNSARTPNLVKHSPSEDKMSPASPIDDIERELKA 10 20 30 180 190 200 210 220 230 pF1KE9 EVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGED-------NGPASPPQPSHQQPYNS :.....:::: ..::.: : :::.:.:.::.: :: .: .:. : : NP_001 EASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRI 40 50 60 70 80 90 240 250 260 pF1KE9 RPAVANGTSRPQ-GSNQLMNALRNDLQLSESGSDSDD : . . .: . .:. :::.:::::::::::::::: NP_001 -PDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD 100 110 120 130 >>XP_016862351 (OMIM: 607659) PREDICTED: ELL-associated (130 aa) initn: 306 init1: 192 opt: 292 Z-score: 176.4 bits: 39.3 E(85289): 0.0044 Smith-Waterman score: 292; 46.5% identity (68.5% similar) in 127 aa overlap (150-268:6-130) 120 130 140 150 160 170 pF1KE9 QARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRA . : : :: .:. :: .:::.:::.: XP_016 MWNSARTPNLVKHSPSEDKMSPASPIDDIERELKA 10 20 30 180 190 200 210 220 230 pF1KE9 EVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGED-------NGPASPPQPSHQQPYNS :.....:::: ..::.: : :::.:.:.::.: :: .: .:. : : XP_016 EASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRI 40 50 60 70 80 90 240 250 260 pF1KE9 RPAVANGTSRPQ-GSNQLMNALRNDLQLSESGSDSDD : . . .: . .:. :::.:::::::::::::::: XP_016 -PDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD 100 110 120 130 >>XP_016862350 (OMIM: 607659) PREDICTED: ELL-associated (130 aa) initn: 306 init1: 192 opt: 292 Z-score: 176.4 bits: 39.3 E(85289): 0.0044 Smith-Waterman score: 292; 46.5% identity (68.5% similar) in 127 aa overlap (150-268:6-130) 120 130 140 150 160 170 pF1KE9 QARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRA . : : :: .:. :: .:::.:::.: XP_016 MWNSARTPNLVKHSPSEDKMSPASPIDDIERELKA 10 20 30 180 190 200 210 220 230 pF1KE9 EVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGED-------NGPASPPQPSHQQPYNS :.....:::: ..::.: : :::.:.:.::.: :: .: .:. : : XP_016 EASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRI 40 50 60 70 80 90 240 250 260 pF1KE9 RPAVANGTSRPQ-GSNQLMNALRNDLQLSESGSDSDD : . . .: . .:. :::.:::::::::::::::: XP_016 -PDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD 100 110 120 130 268 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:23:04 2016 done: Tue Nov 8 10:23:06 2016 Total Scan time: 7.490 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]