FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1980, 557 aa 1>>>pF1KE1980 557 - 557 aa - 557 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.7892+/-0.00109; mu= 3.6227+/- 0.065 mean_var=238.9107+/-47.519, 0's: 0 Z-trim(110.5): 84 B-trim: 5 in 1/52 Lambda= 0.082977 statistics sampled from 11548 (11624) to 11548 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.357), width: 16 Scan time: 3.700 The best scores are: opt bits E(32554) CCDS47280.1 IK gene_id:3550|Hs108|chr5 ( 557) 3700 456.4 4.1e-128 >>CCDS47280.1 IK gene_id:3550|Hs108|chr5 (557 aa) initn: 3700 init1: 3700 opt: 3700 Z-score: 2413.5 bits: 456.4 E(32554): 4.1e-128 Smith-Waterman score: 3700; 100.0% identity (100.0% similar) in 557 aa overlap (1-557:1-557) 10 20 30 40 50 60 pF1KE1 MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMTPRAAPTSAPPSKSRHHEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMTPRAAPTSAPPSKSRHHEM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PREYNEDEDPAARRRKKKSYYAKLRQQEIERERELAEKYRDRAKERRDGVNKDYEETELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 PREYNEDEDPAARRRKKKSYYAKLRQQEIERERELAEKYRDRAKERRDGVNKDYEETELI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 STTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 STTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIAS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KEKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSKAYERNELFLPGRMAYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 KEKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSKAYERNELFLPGRMAYV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 VDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGTRNKKLKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 VDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGTRNKKLKK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 KDKGKLEEKKPPEADMNIFEDIGDYVPSTTKTPRDKERERYRERERDRERDRDRDRERER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 KDKGKLEEKKPPEADMNIFEDIGDYVPSTTKTPRDKERERYRERERDRERDRDRDRERER 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 ERDRERERERDREREEEKKRHSYFEKPKVDDEPMDVDKGPGSTKELIKSINEKFAGSAGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 ERDRERERERDREREEEKKRHSYFEKPKVDDEPMDVDKGPGSTKELIKSINEKFAGSAGW 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 EGTESLKKPEDKKQLGDFFGMSNSYAECYPATMDDMAVDSDEEVDYSKMDQGNKKGPLGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 EGTESLKKPEDKKQLGDFFGMSNSYAECYPATMDDMAVDSDEEVDYSKMDQGNKKGPLGR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 WDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 WDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIE 490 500 510 520 530 540 550 pF1KE1 KRKKMEADGVEVKRPKY ::::::::::::::::: CCDS47 KRKKMEADGVEVKRPKY 550 557 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:39:35 2016 done: Sun Nov 6 09:39:35 2016 Total Scan time: 3.700 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]