FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4063, 340 aa 1>>>pF1KE4063 340 - 340 aa - 340 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7448+/-0.000281; mu= 17.2628+/- 0.018 mean_var=128.2253+/-25.876, 0's: 0 Z-trim(122.8): 272 B-trim: 934 in 1/55 Lambda= 0.113263 statistics sampled from 41122 (41481) to 41122 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.486), width: 16 Scan time: 9.620 The best scores are: opt bits E(85289) NP_775798 (OMIM: 616955) GTP-binding protein REM 2 ( 340) 2289 384.4 1.9e-106 XP_005267440 (OMIM: 616955) PREDICTED: GTP-binding ( 341) 2277 382.5 7.2e-106 XP_016876548 (OMIM: 616955) PREDICTED: GTP-binding ( 372) 2049 345.3 1.3e-94 XP_016876547 (OMIM: 616955) PREDICTED: GTP-binding ( 373) 2037 343.3 4.9e-94 XP_011534820 (OMIM: 616955) PREDICTED: GTP-binding ( 279) 1349 230.7 2.8e-60 NP_004156 (OMIM: 179503) GTP-binding protein RAD [ ( 308) 814 143.4 6.2e-34 NP_001122322 (OMIM: 179503) GTP-binding protein RA ( 308) 814 143.4 6.2e-34 NP_005252 (OMIM: 600164) GTP-binding protein GEM [ ( 296) 768 135.8 1.1e-31 NP_859053 (OMIM: 600164) GTP-binding protein GEM [ ( 296) 768 135.8 1.1e-31 XP_011527097 (OMIM: 610388) PREDICTED: GTP-binding ( 304) 665 119.0 1.3e-26 NP_054731 (OMIM: 610388) GTP-binding protein REM 1 ( 298) 664 118.8 1.5e-26 XP_016883322 (OMIM: 610388) PREDICTED: GTP-binding ( 306) 655 117.4 4.1e-26 XP_005260461 (OMIM: 610388) PREDICTED: GTP-binding ( 306) 655 117.4 4.1e-26 XP_016868804 (OMIM: 600164) PREDICTED: GTP-binding ( 208) 490 90.2 4.2e-18 NP_001243750 (OMIM: 609591,615355) GTP-binding pro ( 236) 390 73.9 3.8e-13 NP_008843 (OMIM: 609591,615355) GTP-binding protei ( 219) 382 72.6 8.9e-13 NP_002921 (OMIM: 609592) GTP-binding protein Rit2 ( 217) 353 67.9 2.4e-11 XP_005263781 (OMIM: 179551) PREDICTED: ras-related ( 228) 346 66.7 5.4e-11 XP_016860110 (OMIM: 179551) PREDICTED: ras-related ( 228) 345 66.6 6e-11 XP_011509875 (OMIM: 179551) PREDICTED: ras-related ( 229) 345 66.6 6e-11 XP_005263786 (OMIM: 179551) PREDICTED: ras-related ( 206) 333 64.6 2.2e-10 XP_005263784 (OMIM: 179551) PREDICTED: ras-related ( 206) 333 64.6 2.2e-10 NP_002872 (OMIM: 179551) ras-related protein Ral-B ( 206) 333 64.6 2.2e-10 XP_016860111 (OMIM: 179551) PREDICTED: ras-related ( 206) 333 64.6 2.2e-10 XP_005263785 (OMIM: 179551) PREDICTED: ras-related ( 206) 333 64.6 2.2e-10 NP_036382 (OMIM: 600098) ras-related protein R-Ras ( 204) 331 64.2 2.7e-10 XP_011513768 (OMIM: 179550) PREDICTED: ras-related ( 206) 328 63.7 3.9e-10 XP_006715825 (OMIM: 179550) PREDICTED: ras-related ( 206) 328 63.7 3.9e-10 NP_005393 (OMIM: 179550) ras-related protein Ral-A ( 206) 328 63.7 3.9e-10 NP_001243749 (OMIM: 609591,615355) GTP-binding pro ( 183) 320 62.4 8.9e-10 NP_006261 (OMIM: 165090) ras-related protein R-Ras ( 218) 306 60.2 4.9e-09 NP_001123914 (OMIM: 109800,137550,162900,163200,18 ( 189) 301 59.3 7.8e-09 NP_005334 (OMIM: 109800,137550,162900,163200,18847 ( 189) 301 59.3 7.8e-09 XP_011518955 (OMIM: 109800,114480,137215,163200,19 ( 188) 293 58.0 1.9e-08 NP_004976 (OMIM: 109800,114480,137215,163200,19007 ( 188) 293 58.0 1.9e-08 XP_006719132 (OMIM: 109800,114480,137215,163200,19 ( 189) 292 57.8 2.2e-08 NP_203524 (OMIM: 109800,114480,137215,163200,19007 ( 189) 292 57.8 2.2e-08 NP_066361 (OMIM: 179540) ras-related protein Rap-2 ( 183) 291 57.6 2.4e-08 XP_016874782 (OMIM: 109800,114480,137215,163200,19 ( 227) 292 57.9 2.4e-08 NP_002515 (OMIM: 114500,137550,162900,163200,16479 ( 189) 287 57.0 3.8e-08 NP_116307 (OMIM: 612664) ras-related and estrogen- ( 199) 287 57.0 3.9e-08 NP_002877 (OMIM: 179541) ras-related protein Rap-2 ( 183) 286 56.8 4.2e-08 NP_001170785 (OMIM: 600098) ras-related protein R- ( 169) 284 56.5 5e-08 XP_016872852 (OMIM: 600098) PREDICTED: ras-related ( 182) 284 56.5 5.2e-08 XP_016861376 (OMIM: 608435) PREDICTED: ras-related ( 208) 284 56.6 5.7e-08 NP_001078518 (OMIM: 608435) ras-related protein M- ( 208) 284 56.6 5.7e-08 NP_036351 (OMIM: 608435) ras-related protein M-Ras ( 208) 284 56.6 5.7e-08 XP_005247285 (OMIM: 608435) PREDICTED: ras-related ( 208) 284 56.6 5.7e-08 NP_001239019 (OMIM: 608435) ras-related protein M- ( 208) 284 56.6 5.7e-08 XP_011509876 (OMIM: 179551) PREDICTED: ras-related ( 195) 283 56.4 6.1e-08 >>NP_775798 (OMIM: 616955) GTP-binding protein REM 2 [Ho (340 aa) initn: 2289 init1: 2289 opt: 2289 Z-score: 2032.2 bits: 384.4 E(85289): 1.9e-106 Smith-Waterman score: 2289; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:1-340) 10 20 30 40 50 60 pF1KE4 MHTDLDTDMDMDTETTALCPSGSRRASPPGTPTPEADATLLKKSEKLLAELDRSGLPSAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 MHTDLDTDMDMDTETTALCPSGSRRASPPGTPTPEADATLLKKSEKLLAELDRSGLPSAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GAPRRRGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 GAPRRRGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 GESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 GESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 RDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 RDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 LEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 LEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPA 250 260 270 280 290 300 310 320 330 340 pF1KE4 PPARRESLTKKAKRFLANLVPRNAKFFKQRSRSCHDLSVL :::::::::::::::::::::::::::::::::::::::: NP_775 PPARRESLTKKAKRFLANLVPRNAKFFKQRSRSCHDLSVL 310 320 330 340 >>XP_005267440 (OMIM: 616955) PREDICTED: GTP-binding pro (341 aa) initn: 2276 init1: 1294 opt: 2277 Z-score: 2021.6 bits: 382.5 E(85289): 7.2e-106 Smith-Waterman score: 2277; 99.7% identity (99.7% similar) in 341 aa overlap (1-340:1-341) 10 20 30 40 50 60 pF1KE4 MHTDLDTDMDMDTETTALCPSGSRRASPPGTPTPEADATLLKKSEKLLAELDRSGLPSAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MHTDLDTDMDMDTETTALCPSGSRRASPPGTPTPEADATLLKKSEKLLAELDRSGLPSAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GAPRRRGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GAPRRRGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLV 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 GESGVGKSTLAGTFGGLQGDSAHEPENP-EDTYERRIMVDKEEVTLVVYDIWEQGDAGGW :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: XP_005 GESGVGKSTLAGTFGGLQGDSAHEPENPAEDTYERRIMVDKEEVTLVVYDIWEQGDAGGW 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE4 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE4 SLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGP 250 260 270 280 290 300 300 310 320 330 340 pF1KE4 APPARRESLTKKAKRFLANLVPRNAKFFKQRSRSCHDLSVL ::::::::::::::::::::::::::::::::::::::::: XP_005 APPARRESLTKKAKRFLANLVPRNAKFFKQRSRSCHDLSVL 310 320 330 340 >>XP_016876548 (OMIM: 616955) PREDICTED: GTP-binding pro (372 aa) initn: 2049 init1: 2049 opt: 2049 Z-score: 1819.8 bits: 345.3 E(85289): 1.3e-94 Smith-Waterman score: 2049; 100.0% identity (100.0% similar) in 306 aa overlap (35-340:67-372) 10 20 30 40 50 60 pF1KE4 LDTDMDMDTETTALCPSGSRRASPPGTPTPEADATLLKKSEKLLAELDRSGLPSAPGAPR :::::::::::::::::::::::::::::: XP_016 ILEQPGLSLLHMVEHIPLIASFSLPSHFILEADATLLKKSEKLLAELDRSGLPSAPGAPR 40 50 60 70 80 90 70 80 90 100 110 120 pF1KE4 RRGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RRGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESG 100 110 120 130 140 150 130 140 150 160 170 180 pF1KE4 VGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHC 160 170 180 190 200 210 190 200 210 220 230 240 pF1KE4 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG 220 230 240 250 260 270 250 260 270 280 290 300 pF1KE4 RHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPAR 280 290 300 310 320 330 310 320 330 340 pF1KE4 RESLTKKAKRFLANLVPRNAKFFKQRSRSCHDLSVL :::::::::::::::::::::::::::::::::::: XP_016 RESLTKKAKRFLANLVPRNAKFFKQRSRSCHDLSVL 340 350 360 370 >>XP_016876547 (OMIM: 616955) PREDICTED: GTP-binding pro (373 aa) initn: 1294 init1: 1294 opt: 2037 Z-score: 1809.2 bits: 343.3 E(85289): 4.9e-94 Smith-Waterman score: 2037; 99.7% identity (99.7% similar) in 307 aa overlap (35-340:67-373) 10 20 30 40 50 60 pF1KE4 LDTDMDMDTETTALCPSGSRRASPPGTPTPEADATLLKKSEKLLAELDRSGLPSAPGAPR :::::::::::::::::::::::::::::: XP_016 ILEQPGLSLLHMVEHIPLIASFSLPSHFILEADATLLKKSEKLLAELDRSGLPSAPGAPR 40 50 60 70 80 90 70 80 90 100 110 120 pF1KE4 RRGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RRGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESG 100 110 120 130 140 150 130 140 150 160 170 180 pF1KE4 VGKSTLAGTFGGLQGDSAHEPENP-EDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDH :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: XP_016 VGKSTLAGTFGGLQGDSAHEPENPAEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDH 160 170 180 190 200 210 190 200 210 220 230 240 pF1KE4 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEE 220 230 240 250 260 270 250 260 270 280 290 300 pF1KE4 GRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPA 280 290 300 310 320 330 310 320 330 340 pF1KE4 RRESLTKKAKRFLANLVPRNAKFFKQRSRSCHDLSVL ::::::::::::::::::::::::::::::::::::: XP_016 RRESLTKKAKRFLANLVPRNAKFFKQRSRSCHDLSVL 340 350 360 370 >>XP_011534820 (OMIM: 616955) PREDICTED: GTP-binding pro (279 aa) initn: 782 init1: 756 opt: 1349 Z-score: 1203.1 bits: 230.7 E(85289): 2.8e-60 Smith-Waterman score: 1349; 99.5% identity (99.5% similar) in 205 aa overlap (35-238:67-271) 10 20 30 40 50 60 pF1KE4 LDTDMDMDTETTALCPSGSRRASPPGTPTPEADATLLKKSEKLLAELDRSGLPSAPGAPR :::::::::::::::::::::::::::::: XP_011 ILEQPGLSLLHMVEHIPLIASFSLPSHFILEADATLLKKSEKLLAELDRSGLPSAPGAPR 40 50 60 70 80 90 70 80 90 100 110 120 pF1KE4 RRGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RRGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESG 100 110 120 130 140 150 130 140 150 160 170 180 pF1KE4 VGKSTLAGTFGGLQGDSAHEPENP-EDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDH :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: XP_011 VGKSTLAGTFGGLQGDSAHEPENPAEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDH 160 170 180 190 200 210 190 200 210 220 230 240 pF1KE4 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEE ::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRERAATW 220 230 240 250 260 270 250 260 270 280 290 300 pF1KE4 GRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPA XP_011 PGR >>NP_004156 (OMIM: 179503) GTP-binding protein RAD [Homo (308 aa) initn: 798 init1: 440 opt: 814 Z-score: 730.2 bits: 143.4 E(85289): 6.2e-34 Smith-Waterman score: 822; 49.0% identity (68.6% similar) in 306 aa overlap (50-340:21-308) 20 30 40 50 60 70 pF1KE4 PSGSRRASPPGTPTPEADATLLKKSEKLLAELDRSGLPSAPGAPRRRGSMPVPYKH---- : :.. : .:. : .: :::: . NP_004 MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAA 10 20 30 40 50 80 90 100 110 120 pF1KE4 ----QLRRAQAVD-----ELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESGVG : : : .:::: . : :::.:: . . ....::.:.: ::: NP_004 LTPGALTAAAAGTGTQGPRLDWPED-----SEDSLSSG--GSDSDESVYKVLLLGAPGVG 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 KSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ ::.:: :::. ... : : ::.: :.:: ::..:.::::::: :.: :: ::. NP_004 KSALARIFGGV--EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ-DGGRWLPGHCMA 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE4 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH :::..::.::::. :: :. : ..:: .: :.:.:::::::::.::::::..::: NP_004 MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE4 LAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPARRE : ...:: ::::::::::.. ::::.:::::::: ..:...: : ::: NP_004 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEANARRQ--------AGTRRRE 230 240 250 260 270 310 320 330 340 pF1KE4 SLTKKAKRFLANLVPRNAK--FFKQRSRSCHDLSVL :: :::::::. .: ::.. :. .:.:::::::: NP_004 SLGKKAKRFLGRIVARNSRKMAFRAKSKSCHDLSVL 280 290 300 >>NP_001122322 (OMIM: 179503) GTP-binding protein RAD [H (308 aa) initn: 798 init1: 440 opt: 814 Z-score: 730.2 bits: 143.4 E(85289): 6.2e-34 Smith-Waterman score: 822; 49.0% identity (68.6% similar) in 306 aa overlap (50-340:21-308) 20 30 40 50 60 70 pF1KE4 PSGSRRASPPGTPTPEADATLLKKSEKLLAELDRSGLPSAPGAPRRRGSMPVPYKH---- : :.. : .:. : .: :::: . NP_001 MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAA 10 20 30 40 50 80 90 100 110 120 pF1KE4 ----QLRRAQAVD-----ELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESGVG : : : .:::: . : :::.:: . . ....::.:.: ::: NP_001 LTPGALTAAAAGTGTQGPRLDWPED-----SEDSLSSG--GSDSDESVYKVLLLGAPGVG 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 KSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ ::.:: :::. ... : : ::.: :.:: ::..:.::::::: :.: :: ::. NP_001 KSALARIFGGV--EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ-DGGRWLPGHCMA 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE4 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH :::..::.::::. :: :. : ..:: .: :.:.:::::::::.::::::..::: NP_001 MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE4 LAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPARRE : ...:: ::::::::::.. ::::.:::::::: ..:...: : ::: NP_001 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEANARRQ--------AGTRRRE 230 240 250 260 270 310 320 330 340 pF1KE4 SLTKKAKRFLANLVPRNAK--FFKQRSRSCHDLSVL :: :::::::. .: ::.. :. .:.:::::::: NP_001 SLGKKAKRFLGRIVARNSRKMAFRAKSKSCHDLSVL 280 290 300 >>NP_005252 (OMIM: 600164) GTP-binding protein GEM [Homo (296 aa) initn: 724 init1: 545 opt: 768 Z-score: 689.7 bits: 135.8 E(85289): 1.1e-31 Smith-Waterman score: 768; 45.5% identity (71.3% similar) in 286 aa overlap (58-340:23-296) 30 40 50 60 70 80 pF1KE4 PPGTPTPEADATLLKKSEKLLAELDRSGLPSAPGAPRRRGSMPVPYKHQLRRAQAVDELD : :. :. . :.... : ... : NP_005 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPED 10 20 30 40 50 90 100 110 120 130 140 pF1KE4 WPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPEN .. :: :.::. :.:.. . ..:.:.::.::::::::. :.:.. . . : NP_005 HCRRSWSSDSTDSVISSESG----NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV 60 70 80 90 100 150 160 170 180 190 200 pF1KE4 -PEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV :::::: .::: : .:... :.::. . ::.:::.:.:::.:::.:.::: :: :. NP_005 LGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKA 110 120 130 140 150 160 210 220 230 240 250 260 pF1KE4 PETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT : ..:: .: .:.:.:::::::::.: ::::. ::: : ...:: ::::::..::. NP_005 SELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 170 180 190 200 210 220 270 280 290 300 310 320 pF1KE4 RELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPARRESLTKKAKRFLANLVPRNAK- .::::: :::.:::: .. . .: : :.::. .::.:: ...: .: : NP_005 KELFEGIVRQVRLRRDSKEKNERRL--------AYQKRKESMPRKARRFWGKIVAKNNKN 230 240 250 260 270 280 330 340 pF1KE4 -FFKQRSRSCHDLSVL :: .:.:::::::: NP_005 MAFKLKSKSCHDLSVL 290 >>NP_859053 (OMIM: 600164) GTP-binding protein GEM [Homo (296 aa) initn: 724 init1: 545 opt: 768 Z-score: 689.7 bits: 135.8 E(85289): 1.1e-31 Smith-Waterman score: 768; 45.5% identity (71.3% similar) in 286 aa overlap (58-340:23-296) 30 40 50 60 70 80 pF1KE4 PPGTPTPEADATLLKKSEKLLAELDRSGLPSAPGAPRRRGSMPVPYKHQLRRAQAVDELD : :. :. . :.... : ... : NP_859 MTLNNVTMRQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPED 10 20 30 40 50 90 100 110 120 130 140 pF1KE4 WPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPEN .. :: :.::. :.:.. . ..:.:.::.::::::::. :.:.. . . : NP_859 HCRRSWSSDSTDSVISSESG----NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV 60 70 80 90 100 150 160 170 180 190 200 pF1KE4 -PEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV :::::: .::: : .:... :.::. . ::.:::.:.:::.:::.:.::: :: :. NP_859 LGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKA 110 120 130 140 150 160 210 220 230 240 250 260 pF1KE4 PETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT : ..:: .: .:.:.:::::::::.: ::::. ::: : ...:: ::::::..::. NP_859 SELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 170 180 190 200 210 220 270 280 290 300 310 320 pF1KE4 RELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPARRESLTKKAKRFLANLVPRNAK- .::::: :::.:::: .. . .: : :.::. .::.:: ...: .: : NP_859 KELFEGIVRQVRLRRDSKEKNERRL--------AYQKRKESMPRKARRFWGKIVAKNNKN 230 240 250 260 270 280 330 340 pF1KE4 -FFKQRSRSCHDLSVL :: .:.:::::::: NP_859 MAFKLKSKSCHDLSVL 290 >>XP_011527097 (OMIM: 610388) PREDICTED: GTP-binding pro (304 aa) initn: 632 init1: 379 opt: 665 Z-score: 598.6 bits: 119.0 E(85289): 1.3e-26 Smith-Waterman score: 705; 42.2% identity (63.3% similar) in 341 aa overlap (9-340:1-304) 10 20 30 40 50 pF1KE4 MHTDLDTDMDMDTETTALCPSGSRRASPPGTPTPEADAT-LLKKSEKLLAELDRSGLPSA : ..:: : : :::: : .:.. :. . .. : : .. XP_011 MTLNTEQEAKTPL-HRRASTPLPLSPRGHQPGRLSTVPSTQSQHPRLGQSAS 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 PGAPRRRGSMPVPYKHQLRRAQAVDELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVML . : .. : :.: : :: :: :::: :: :: ...:.: XP_011 LNPPTQKPS-PAP-----------D--DW-----SSESSDSEGSWEA-------LYRVVL 60 70 80 120 130 140 150 160 170 pF1KE4 VGESGVGKSTLAGTFGGLQGDSAHE-----PENPEDTYERRIMVDKEEVTLVVYDIWEQG .:. ::::..::. :.: : . :: : ::.::: . :: :..:::: : :: XP_011 LGDPGVGKTSLASLFAGKQERDLHEQLGALPSVAEDVYERTLTVDGEDTTLVVVDTWEAE 90 100 110 120 130 140 180 190 200 210 220 230 pF1KE4 DAG-GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL .: .. ::: :.:..::.:..:: :: .. : ..:: . .:.::::::.:: XP_011 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 150 160 170 180 190 200 240 250 260 270 280 290 pF1KE4 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDP :: ::::.:::: : ...:: :::::.:.::. :::::.:::.:::: :. :. .: XP_011 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR-RDSAA---KEP 210 220 230 240 250 260 300 310 320 330 340 pF1KE4 GSPEGPAPPARRESLTKKAKRFLANLVPRNAKF--FKQRSRSCHDLSVL .:. :: ::...:.:::: :. :.:. .: ::.:::.:.:: XP_011 PAPRRPA------SLAQRARRFLARLTARSARRRALKARSKSCHNLAVL 270 280 290 300 340 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:05:51 2016 done: Sun Nov 6 04:05:52 2016 Total Scan time: 9.620 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]