FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3030, 156 aa 1>>>pF1KE3030 156 - 156 aa - 156 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3329+/-0.00039; mu= 13.0500+/- 0.024 mean_var=131.2146+/-29.174, 0's: 0 Z-trim(115.4): 308 B-trim: 0 in 0/50 Lambda= 0.111965 statistics sampled from 25484 (25909) to 25484 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.304), width: 16 Scan time: 4.950 The best scores are: opt bits E(85289) NP_002306 (OMIM: 186921) rhombotin-1 isoform a [Ho ( 156) 1124 192.2 2.8e-49 NP_001257357 (OMIM: 186921) rhombotin-1 isoform b ( 155) 1113 190.4 9.7e-49 XP_006718291 (OMIM: 186921) PREDICTED: rhombotin-1 ( 193) 1072 184.0 1.1e-46 XP_011518400 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 1049 180.1 1.2e-45 XP_011518401 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 1049 180.1 1.2e-45 NP_001230540 (OMIM: 180386) LIM domain only protei ( 156) 962 166.1 2.1e-41 NP_001230541 (OMIM: 180386) LIM domain only protei ( 163) 951 164.3 7.5e-41 XP_006719173 (OMIM: 180386) PREDICTED: LIM domain ( 145) 948 163.8 9.8e-41 XP_006719174 (OMIM: 180386) PREDICTED: LIM domain ( 145) 948 163.8 9.8e-41 XP_011519064 (OMIM: 180386) PREDICTED: LIM domain ( 145) 948 163.8 9.8e-41 NP_061110 (OMIM: 180386) LIM domain only protein 3 ( 145) 948 163.8 9.8e-41 XP_011519065 (OMIM: 180386) PREDICTED: LIM domain ( 145) 948 163.8 9.8e-41 NP_001230538 (OMIM: 180386) LIM domain only protei ( 145) 948 163.8 9.8e-41 NP_001001395 (OMIM: 180386) LIM domain only protei ( 145) 948 163.8 9.8e-41 NP_001230539 (OMIM: 180386) LIM domain only protei ( 145) 948 163.8 9.8e-41 XP_005252978 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 578 104.0 1e-22 NP_001135788 (OMIM: 180385) rhombotin-2 isoform 2 ( 158) 578 104.0 1e-22 XP_016873218 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 578 104.0 1e-22 NP_001135787 (OMIM: 180385) rhombotin-2 isoform 2 ( 158) 578 104.0 1e-22 XP_016873217 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 578 104.0 1e-22 XP_016873221 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 578 104.0 1e-22 XP_016873219 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 578 104.0 1e-22 XP_016873222 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 578 104.0 1e-22 XP_016873216 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 578 104.0 1e-22 XP_016873220 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 578 104.0 1e-22 NP_005565 (OMIM: 180385) rhombotin-2 isoform 1 [Ho ( 227) 578 104.2 1.3e-22 NP_006760 (OMIM: 603129) LIM domain transcription ( 165) 554 100.2 1.5e-21 XP_005271348 (OMIM: 603129) PREDICTED: LIM domain ( 165) 554 100.2 1.5e-21 XP_011518402 (OMIM: 186921) PREDICTED: rhombotin-1 ( 122) 552 99.7 1.6e-21 XP_016875132 (OMIM: 180386) PREDICTED: LIM domain ( 125) 469 86.3 1.8e-17 NP_001230542 (OMIM: 180386) LIM domain only protei ( 167) 469 86.5 2.1e-17 XP_005245407 (OMIM: 606066) PREDICTED: LIM/homeobo ( 336) 440 82.2 8.1e-16 XP_016857338 (OMIM: 606066) PREDICTED: LIM/homeobo ( 378) 440 82.3 8.7e-16 NP_001014434 (OMIM: 606066) LIM/homeobox protein L ( 388) 440 82.3 8.9e-16 NP_203129 (OMIM: 262700,602146) LIM/homeobox prote ( 390) 440 82.3 8.9e-16 NP_064589 (OMIM: 606066) LIM/homeobox protein Lhx9 ( 397) 440 82.3 9e-16 XP_011508083 (OMIM: 606066) PREDICTED: LIM/homeobo ( 403) 440 82.3 9.1e-16 XP_006717386 (OMIM: 603759) PREDICTED: LIM/homeobo ( 314) 430 80.5 2.4e-15 NP_004780 (OMIM: 603759) LIM/homeobox protein Lhx2 ( 406) 430 80.7 2.8e-15 XP_016870657 (OMIM: 221750,600577) PREDICTED: LIM/ ( 373) 406 76.8 3.9e-14 XP_005263467 (OMIM: 221750,600577) PREDICTED: LIM/ ( 386) 406 76.8 4e-14 NP_835258 (OMIM: 221750,600577) LIM/homeobox prote ( 397) 406 76.8 4e-14 NP_055379 (OMIM: 221750,600577) LIM/homeobox prote ( 402) 406 76.8 4.1e-14 NP_005559 (OMIM: 601999) LIM/homeobox protein Lhx1 ( 406) 379 72.4 8.4e-13 XP_011507842 (OMIM: 600298) PREDICTED: LIM homeobo ( 279) 370 70.8 1.8e-12 NP_665804 (OMIM: 609481) insulin gene enhancer pro ( 359) 370 70.9 2.1e-12 NP_796372 (OMIM: 600298) LIM homeobox transcriptio ( 382) 370 71.0 2.2e-12 NP_001167540 (OMIM: 600298) LIM homeobox transcrip ( 382) 370 71.0 2.2e-12 XP_016877994 (OMIM: 609481) PREDICTED: insulin gen ( 534) 370 71.1 2.7e-12 NP_002307 (OMIM: 161200,602575) LIM homeobox trans ( 395) 367 70.5 3.2e-12 >>NP_002306 (OMIM: 186921) rhombotin-1 isoform a [Homo s (156 aa) initn: 1124 init1: 1124 opt: 1124 Z-score: 1005.6 bits: 192.2 E(85289): 2.8e-49 Smith-Waterman score: 1124; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156) 10 20 30 40 50 60 pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN 70 80 90 100 110 120 130 140 150 pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ :::::::::::::::::::::::::::::::::::: NP_002 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ 130 140 150 >>NP_001257357 (OMIM: 186921) rhombotin-1 isoform b [Hom (155 aa) initn: 1113 init1: 1113 opt: 1113 Z-score: 996.1 bits: 190.4 E(85289): 9.7e-49 Smith-Waterman score: 1113; 99.4% identity (100.0% similar) in 155 aa overlap (2-156:1-155) 10 20 30 40 50 60 pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVLDQEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN 60 70 80 90 100 110 130 140 150 pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ :::::::::::::::::::::::::::::::::::: NP_001 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ 120 130 140 150 >>XP_006718291 (OMIM: 186921) PREDICTED: rhombotin-1 iso (193 aa) initn: 1072 init1: 1072 opt: 1072 Z-score: 959.2 bits: 184.0 E(85289): 1.1e-46 Smith-Waterman score: 1072; 100.0% identity (100.0% similar) in 148 aa overlap (9-156:46-193) 10 20 30 pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLK :::::::::::::::::::::::::::::: XP_006 GEPRGRAWSDLELGEVDVLGWKSGLGGAHWGVPMLSVQPKGKQKGCAGCNRKIKDRYLLK 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE3 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE3 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ 140 150 160 170 180 190 >>XP_011518400 (OMIM: 186921) PREDICTED: rhombotin-1 iso (145 aa) initn: 1049 init1: 1049 opt: 1049 Z-score: 940.5 bits: 180.1 E(85289): 1.2e-45 Smith-Waterman score: 1049; 100.0% identity (100.0% similar) in 145 aa overlap (12-156:1-145) 10 20 30 40 50 60 pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE ::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE 10 20 30 40 70 80 90 100 110 120 pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN 50 60 70 80 90 100 130 140 150 pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ :::::::::::::::::::::::::::::::::::: XP_011 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ 110 120 130 140 >>XP_011518401 (OMIM: 186921) PREDICTED: rhombotin-1 iso (145 aa) initn: 1049 init1: 1049 opt: 1049 Z-score: 940.5 bits: 180.1 E(85289): 1.2e-45 Smith-Waterman score: 1049; 100.0% identity (100.0% similar) in 145 aa overlap (12-156:1-145) 10 20 30 40 50 60 pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE ::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE 10 20 30 40 70 80 90 100 110 120 pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN 50 60 70 80 90 100 130 140 150 pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ :::::::::::::::::::::::::::::::::::: XP_011 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ 110 120 130 140 >>NP_001230540 (OMIM: 180386) LIM domain only protein 3 (156 aa) initn: 1052 init1: 948 opt: 962 Z-score: 864.2 bits: 166.1 E(85289): 2.1e-41 Smith-Waterman score: 962; 85.3% identity (91.0% similar) in 156 aa overlap (1-156:1-156) 10 20 30 40 50 60 pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE :. .: :. :::::: : ::::::::::::::::::::::::::::::::::::::: NP_001 MQKKEKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN :::::::::::::::::::::::.::::::::::::::::::::.::::::::::::::: NP_001 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN 70 80 90 100 110 120 130 140 150 pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ ::::::::::::::::::: ::::: .. . ::. NP_001 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR 130 140 150 >>NP_001230541 (OMIM: 180386) LIM domain only protein 3 (163 aa) initn: 1040 init1: 948 opt: 951 Z-score: 854.4 bits: 164.3 E(85289): 7.5e-41 Smith-Waterman score: 951; 88.4% identity (93.2% similar) in 147 aa overlap (10-156:17-163) 10 20 30 40 50 pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC . :::::: : :::::::::::::::::::::::::::::::: NP_001 MLMEGGRAAAARNVSSIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 CDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDC ::::::::::::::::::::::::::::::.::::::::::::::::::::.:::::::: NP_001 CDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDC 70 80 90 100 110 120 120 130 140 150 pF1KE3 FACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ :::::::::::::::::::::::::: ::::: .. . ::. NP_001 FACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR 130 140 150 160 >>XP_006719173 (OMIM: 180386) PREDICTED: LIM domain only (145 aa) initn: 1052 init1: 948 opt: 948 Z-score: 852.3 bits: 163.8 E(85289): 9.8e-41 Smith-Waterman score: 948; 89.7% identity (93.8% similar) in 145 aa overlap (12-156:1-145) 10 20 30 40 50 60 pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE :::::: : ::::::::::::::::::::::::::::::::::::::: XP_006 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE 10 20 30 40 70 80 90 100 110 120 pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN :::::::::::::::::::::::.::::::::::::::::::::.::::::::::::::: XP_006 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN 50 60 70 80 90 100 130 140 150 pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ ::::::::::::::::::: ::::: .. . ::. XP_006 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR 110 120 130 140 >>XP_006719174 (OMIM: 180386) PREDICTED: LIM domain only (145 aa) initn: 1052 init1: 948 opt: 948 Z-score: 852.3 bits: 163.8 E(85289): 9.8e-41 Smith-Waterman score: 948; 89.7% identity (93.8% similar) in 145 aa overlap (12-156:1-145) 10 20 30 40 50 60 pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE :::::: : ::::::::::::::::::::::::::::::::::::::: XP_006 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE 10 20 30 40 70 80 90 100 110 120 pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN :::::::::::::::::::::::.::::::::::::::::::::.::::::::::::::: XP_006 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN 50 60 70 80 90 100 130 140 150 pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ ::::::::::::::::::: ::::: .. . ::. XP_006 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR 110 120 130 140 >>XP_011519064 (OMIM: 180386) PREDICTED: LIM domain only (145 aa) initn: 1052 init1: 948 opt: 948 Z-score: 852.3 bits: 163.8 E(85289): 9.8e-41 Smith-Waterman score: 948; 89.7% identity (93.8% similar) in 145 aa overlap (12-156:1-145) 10 20 30 40 50 60 pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE :::::: : ::::::::::::::::::::::::::::::::::::::: XP_011 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE 10 20 30 40 70 80 90 100 110 120 pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN :::::::::::::::::::::::.::::::::::::::::::::.::::::::::::::: XP_011 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN 50 60 70 80 90 100 130 140 150 pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ ::::::::::::::::::: ::::: .. . ::. XP_011 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR 110 120 130 140 156 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:56:52 2016 done: Sun Nov 6 04:56:53 2016 Total Scan time: 4.950 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]