FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1611, 115 aa
  1>>>pF1KE1611 115 - 115 aa - 115 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9661+/-0.000683; mu= 10.8153+/- 0.041
 mean_var=45.3364+/- 9.132, 0's: 0 Z-trim(107.1): 15  B-trim: 0 in 0/49
 Lambda= 0.190481
 statistics sampled from 9355 (9359) to 9355 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.287), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS34928.1 RPL30 gene_id:6156|Hs108|chr8          ( 115)  739 210.0 2.7e-55


>>CCDS34928.1 RPL30 gene_id:6156|Hs108|chr8               (115 aa)
 initn: 739 init1: 739 opt: 739  Z-score: 1106.2  bits: 210.0 E(32554): 2.7e-55
Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE1 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
               70        80        90       100       110     




115 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:41:05 2016 done: Sun Nov  6 09:41:05 2016
 Total Scan time:  1.530 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]