FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3029, 153 aa
  1>>>pF1KE3029 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1197+/-0.000573; mu= 13.1263+/- 0.035
 mean_var=62.2283+/-12.298, 0's: 0 Z-trim(111.9): 5  B-trim: 19 in 1/52
 Lambda= 0.162585
 statistics sampled from 12768 (12771) to 12768 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.392), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS33259.1 NMS gene_id:129521|Hs108|chr2          ( 153) 1082 261.4 1.6e-70


>>CCDS33259.1 NMS gene_id:129521|Hs108|chr2               (153 aa)
 initn: 1082 init1: 1082 opt: 1082  Z-score: 1379.6  bits: 261.4 E(32554): 1.6e-70
Smith-Waterman score: 1082; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE3 MKHLRPQFPLILAIYCFCMLQIPSSGFPQPLADPSDGLDIVQLEQLAYCLSQWAPLSRQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MKHLRPQFPLILAIYCFCMLQIPSSGFPQPLADPSDGLDIVQLEQLAYCLSQWAPLSRQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 KDNQDIYKRFLFHYSRTQEATHPVKTGFPPVHPLMHLAAKLANRRMKRILQRGSGTAAVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KDNQDIYKRFLFHYSRTQEATHPVKTGFPPVHPLMHLAAKLANRRMKRILQRGSGTAAVD
               70        80        90       100       110       120

              130       140       150   
pF1KE3 FTKKDHTATWGRPFFLFRPRNGRNIEDEAQIQW
       :::::::::::::::::::::::::::::::::
CCDS33 FTKKDHTATWGRPFFLFRPRNGRNIEDEAQIQW
              130       140       150   




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:29:58 2016 done: Sun Nov  6 04:29:59 2016
 Total Scan time:  1.890 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]