FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1230, 343 aa 1>>>pF1KE1230 343 - 343 aa - 343 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7435+/-0.000951; mu= 13.3059+/- 0.057 mean_var=59.6397+/-11.961, 0's: 0 Z-trim(103.9): 13 B-trim: 0 in 0/48 Lambda= 0.166076 statistics sampled from 7619 (7623) to 7619 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.608), E-opt: 0.2 (0.234), width: 16 Scan time: 2.480 The best scores are: opt bits E(32554) CCDS33069.1 FUT2 gene_id:2524|Hs108|chr19 ( 343) 2362 574.5 4.4e-164 CCDS12733.1 FUT1 gene_id:2523|Hs108|chr19 ( 365) 1413 347.1 1.3e-95 >>CCDS33069.1 FUT2 gene_id:2524|Hs108|chr19 (343 aa) initn: 2362 init1: 2362 opt: 2362 Z-score: 3059.2 bits: 574.5 E(32554): 4.4e-164 Smith-Waterman score: 2362; 100.0% identity (100.0% similar) in 343 aa overlap (1-343:1-343) 10 20 30 40 50 60 pF1KE1 MLVVQMPFSFPMAHFILFVFTVSTIFHVQQRLAKIQAMWELPVQIPVLASTSKALGPSQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MLVVQMPFSFPMAHFILFVFTVSTIFHVQQRLAKIQAMWELPVQIPVLASTSKALGPSQL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RGMWTINAIGRLGNQMGEYATLYALAKMNGRPAFIPAQMHSTLAPIFRITLPVLHSATAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 RGMWTINAIGRLGNQMGEYATLYALAKMNGRPAFIPAQMHSTLAPIFRITLPVLHSATAS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RIPWQNYHLNDWMEEEYRHIPGEYVRFTGYPCSWTFYHHLRQEILQEFTLHDHVREEAQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 RIPWQNYHLNDWMEEEYRHIPGEYVRFTGYPCSWTFYHHLRQEILQEFTLHDHVREEAQK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FLRGLQVNGSRPGTFVGVHVRRGDYVHVMPKVWKGVVADRRYLQQALDWFRARYSSLIFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 FLRGLQVNGSRPGTFVGVHVRRGDYVHVMPKVWKGVVADRRYLQQALDWFRARYSSLIFV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 VTSNGMAWCRENIDTSHGDVVFAGDGIEGSPAKDFALLTQCNHTIMTIGTFGIWAAYLTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 VTSNGMAWCRENIDTSHGDVVFAGDGIEGSPAKDFALLTQCNHTIMTIGTFGIWAAYLTG 250 260 270 280 290 300 310 320 330 340 pF1KE1 GDTIYLANYTLPDSPFLKIFKPEAAFLPEWTGIAADLSPLLKH ::::::::::::::::::::::::::::::::::::::::::: CCDS33 GDTIYLANYTLPDSPFLKIFKPEAAFLPEWTGIAADLSPLLKH 310 320 330 340 >>CCDS12733.1 FUT1 gene_id:2523|Hs108|chr19 (365 aa) initn: 1436 init1: 866 opt: 1413 Z-score: 1829.9 bits: 347.1 E(32554): 1.3e-95 Smith-Waterman score: 1413; 67.7% identity (85.4% similar) in 294 aa overlap (49-340:66-359) 20 30 40 50 60 70 pF1KE1 VFTVSTIFHVQQRLAKIQAMWELPVQIPVLASTSKALGPSQLRGMWTINAIGRLGNQMGE ::.: :..: : ::. ::.:::::. CCDS12 LGLSILCPDRRLVTPPVAIFCLPGTAMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQ 40 50 60 70 80 90 80 90 100 110 120 130 pF1KE1 YATLYALAKMNGRPAFIPAQMHSTLAPIFRITLPVLHSATASRIPWQNYHLNDWMEEEYR :::: :::..::: ::: ::..:::.:::::::: . :: ::.. .:.::: ::: CCDS12 YATLLALAQLNGRRAFILPAMHAALAPVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYA 100 110 120 130 140 150 140 150 160 170 180 190 pF1KE1 HIPGEYVRFTGYPCSWTFYHHLRQEILQEFTLHDHVREEAQKFLRGLQVN--GSRPGTFV . .....:.::::::.::::..: .:::::::.:::::. : :... :.:: ::: CCDS12 DLRDPFLKLSGFPCSWTFFHHLREQIRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFV 160 170 180 190 200 210 200 210 220 230 240 250 pF1KE1 GVHVRRGDYVHVMPKVWKGVVADRRYLQQALDWFRARYSSLIFVVTSNGMAWCRENIDTS :::::::::..:::. :::::.: ::.::.::::::. . .:::::::: ::.:::::: CCDS12 GVHVRRGDYLQVMPQRWKGVVGDSAYLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTS 220 230 240 250 260 270 260 270 280 290 300 310 pF1KE1 HGDVVFAGDGIEGSPAKDFALLTQCNHTIMTIGTFGIWAAYLTGGDTIYLANYTLPDSPF .:::.::::: :..: ::::::::::::::::::::.:::::.::::.::::.::::: : CCDS12 QGDVTFAGDGQEATPWKDFALLTQCNHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEF 280 290 300 310 320 330 320 330 340 pF1KE1 LKIFKPEAAFLPEWTGIAADLSPLLKH ::::::::::::::.:: :::::: CCDS12 LKIFKPEAAFLPEWVGINADLSPLWTLAKP 340 350 360 343 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:17:38 2016 done: Tue Nov 8 03:17:39 2016 Total Scan time: 2.480 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]