FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3322, 913 aa 1>>>pF1KE3322 913 - 913 aa - 913 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7420+/-0.000443; mu= 14.1940+/- 0.027 mean_var=107.3936+/-23.083, 0's: 0 Z-trim(112.4): 177 B-trim: 0 in 0/53 Lambda= 0.123761 statistics sampled from 21107 (21317) to 21107 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.25), width: 16 Scan time: 12.300 The best scores are: opt bits E(85289) NP_114113 (OMIM: 300309) ubiquitin carboxyl-termin ( 913) 6036 1089.5 0 XP_016885381 (OMIM: 300309) PREDICTED: ubiquitin c ( 913) 6036 1089.5 0 NP_065954 (OMIM: 609546) ubiquitin carboxyl-termin ( 922) 1690 313.5 3e-84 XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 255 57.3 4.1e-07 XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 255 57.3 4.1e-07 NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012) 255 57.3 4.4e-07 XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 255 57.3 4.7e-07 XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 255 57.3 4.7e-07 XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 255 57.3 4.7e-07 XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 255 57.3 4.7e-07 XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 255 57.3 4.8e-07 NP_001122082 (OMIM: 603158) ubiquitin carboxyl-ter (1118) 255 57.3 4.8e-07 NP_005145 (OMIM: 603158) ubiquitin carboxyl-termin (1118) 255 57.3 4.8e-07 XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 255 57.3 4.8e-07 XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin c ( 341) 238 54.0 1.5e-06 NP_001127695 (OMIM: 612849) ubiquitin carboxyl-ter ( 359) 238 54.0 1.5e-06 NP_073743 (OMIM: 612849) ubiquitin carboxyl-termin ( 366) 238 54.0 1.5e-06 XP_016861124 (OMIM: 614471) PREDICTED: ubiquitin c ( 871) 241 54.8 2.2e-06 XP_005264888 (OMIM: 614471) PREDICTED: ubiquitin c (1268) 241 54.9 3e-06 XP_016861123 (OMIM: 614471) PREDICTED: ubiquitin c (1270) 241 54.9 3e-06 XP_016861122 (OMIM: 614471) PREDICTED: ubiquitin c (1281) 241 54.9 3e-06 XP_016861121 (OMIM: 614471) PREDICTED: ubiquitin c (1283) 241 54.9 3e-06 XP_016861120 (OMIM: 614471) PREDICTED: ubiquitin c (1283) 241 54.9 3e-06 XP_016861119 (OMIM: 614471) PREDICTED: ubiquitin c (1285) 241 54.9 3e-06 XP_016861118 (OMIM: 614471) PREDICTED: ubiquitin c (1303) 241 54.9 3.1e-06 XP_016861117 (OMIM: 614471) PREDICTED: ubiquitin c (1305) 241 54.9 3.1e-06 XP_016861116 (OMIM: 614471) PREDICTED: ubiquitin c (1307) 241 54.9 3.1e-06 XP_016861115 (OMIM: 614471) PREDICTED: ubiquitin c (1318) 241 54.9 3.1e-06 NP_006668 (OMIM: 614471) ubiquitin carboxyl-termin (1318) 241 54.9 3.1e-06 XP_016861114 (OMIM: 614471) PREDICTED: ubiquitin c (1320) 241 54.9 3.1e-06 XP_005264887 (OMIM: 614471) PREDICTED: ubiquitin c (1322) 241 54.9 3.1e-06 XP_016861113 (OMIM: 614471) PREDICTED: ubiquitin c (1332) 241 54.9 3.1e-06 XP_006713015 (OMIM: 614471) PREDICTED: ubiquitin c (1367) 241 54.9 3.2e-06 XP_006713014 (OMIM: 614471) PREDICTED: ubiquitin c (1368) 241 54.9 3.2e-06 XP_006713013 (OMIM: 614471) PREDICTED: ubiquitin c (1369) 241 54.9 3.2e-06 XP_016861112 (OMIM: 614471) PREDICTED: ubiquitin c (1369) 241 54.9 3.2e-06 XP_016861111 (OMIM: 614471) PREDICTED: ubiquitin c (1371) 241 54.9 3.2e-06 XP_016861110 (OMIM: 614471) PREDICTED: ubiquitin c (1371) 241 54.9 3.2e-06 NP_001186091 (OMIM: 614471) ubiquitin carboxyl-ter (1372) 241 54.9 3.2e-06 XP_006713012 (OMIM: 614471) PREDICTED: ubiquitin c (1373) 241 54.9 3.2e-06 XP_016861109 (OMIM: 614471) PREDICTED: ubiquitin c (1381) 241 54.9 3.2e-06 XP_006713011 (OMIM: 614471) PREDICTED: ubiquitin c (1382) 241 54.9 3.2e-06 XP_016861108 (OMIM: 614471) PREDICTED: ubiquitin c (1383) 241 54.9 3.2e-06 XP_016861107 (OMIM: 614471) PREDICTED: ubiquitin c (1384) 241 54.9 3.2e-06 NP_001186090 (OMIM: 614471) ubiquitin carboxyl-ter (1384) 241 54.9 3.2e-06 XP_005264886 (OMIM: 614471) PREDICTED: ubiquitin c (1386) 241 54.9 3.2e-06 XP_006713016 (OMIM: 614471) PREDICTED: ubiquitin c (1404) 241 54.9 3.3e-06 XP_006713010 (OMIM: 614471) PREDICTED: ubiquitin c (1405) 241 54.9 3.3e-06 XP_016861106 (OMIM: 614471) PREDICTED: ubiquitin c (1406) 241 54.9 3.3e-06 XP_005264884 (OMIM: 614471) PREDICTED: ubiquitin c (1408) 241 54.9 3.3e-06 >>NP_114113 (OMIM: 300309) ubiquitin carboxyl-terminal h (913 aa) initn: 6036 init1: 6036 opt: 6036 Z-score: 5827.3 bits: 1089.5 E(85289): 0 Smith-Waterman score: 6036; 99.9% identity (99.9% similar) in 913 aa overlap (1-913:1-913) 10 20 30 40 50 60 pF1KE3 MAALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 MAALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LKSYRGNQNHLHLTLQNNNGLFIEGLSSTDAEQLKIFLDRVHQNEVQPPVRPGKGGSVFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 LKSYRGNQNHLHLTLQNNNGLFIEGLSSTDAEQLKIFLDRVHQNEVQPPVRPGKGGSVFS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 STTQKEINKTSFHKVDEKSSSKSFEIAKGSGTGVLQRMPLLTSKLTLTCGELSENQHKKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 STTQKEINKTSFHKVDEKSSSKSFEIAKGSGTGVLQRMPLLTSKLTLTCGELSENQHKKR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 KRMLSSSSEMNEEFLKENNSVEYKKSKADCSRCVSYNREKQLKLKELEENKKLECESSCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 KRMLSSSSEMNEEFLKENNSVEYKKSKADCSRCVSYNREKQLKLKELEENKKLECESSCI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 MNATGNPYLDDIGLLQALTEKMVLVFLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 MNATGNPYLDDIGLLQALTEKMVLVFLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 GNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMCLARLLFFKDTYNIEIKEML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 GNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMCLARLLFFKDTYNIEIKEML 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 LLNLKKAISAAAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGEDNFPKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 LLNLKKAISAAAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGEDNFPKQV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 FADDPDTSGFSCPVITNFELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 FADDPDTSGFSCPVITNFELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQ 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 STFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 STFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVI 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 ISKYLKVSSHCNEGTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 ISKYLKVSSHCNEGTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAP 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE3 HIGSDKESEQKKGQTVFKGASRRQQQKYLGKNSKPNELESVYSGDRAFIEKEPLAHLMTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 HIGSDKESEQKKGQTVFKGASRRQQQKYLGKNSKPNELESVYSGDRAFIEKEPLAHLMTY 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE3 LEDTSLCQFHKAGGKPASSPGTPLSKVDFQTVPENPKRKKNVKTSKFVAFDRIINPTKDL :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: NP_114 LEDTSLCQFHKAGGKPASSPGTPLSKVDFQTVPENPKRKKYVKTSKFVAFDRIINPTKDL 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE3 YEDKNIRIPERFQKVSEQTQQCDGMRICEQAPQQALPQSFPKPGTQGHTKNLLRPTKLNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 YEDKNIRIPERFQKVSEQTQQCDGMRICEQAPQQALPQSFPKPGTQGHTKNLLRPTKLNL 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE3 QKSNRNSLLALGSNKNPRNKDILDKIKSKAKETKRNDDKGDHTYRLISVVSHLGKTLKSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 QKSNRNSLLALGSNKNPRNKDILDKIKSKAKETKRNDDKGDHTYRLISVVSHLGKTLKSG 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE3 HYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDRRCTGYIFFYMHNEIFEEMLKREENAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 HYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDRRCTGYIFFYMHNEIFEEMLKREENAQ 850 860 870 880 890 900 910 pF1KE3 LNSKEVEETLQKE ::::::::::::: NP_114 LNSKEVEETLQKE 910 >>XP_016885381 (OMIM: 300309) PREDICTED: ubiquitin carbo (913 aa) initn: 6036 init1: 6036 opt: 6036 Z-score: 5827.3 bits: 1089.5 E(85289): 0 Smith-Waterman score: 6036; 99.9% identity (99.9% similar) in 913 aa overlap (1-913:1-913) 10 20 30 40 50 60 pF1KE3 MAALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LKSYRGNQNHLHLTLQNNNGLFIEGLSSTDAEQLKIFLDRVHQNEVQPPVRPGKGGSVFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LKSYRGNQNHLHLTLQNNNGLFIEGLSSTDAEQLKIFLDRVHQNEVQPPVRPGKGGSVFS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 STTQKEINKTSFHKVDEKSSSKSFEIAKGSGTGVLQRMPLLTSKLTLTCGELSENQHKKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 STTQKEINKTSFHKVDEKSSSKSFEIAKGSGTGVLQRMPLLTSKLTLTCGELSENQHKKR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 KRMLSSSSEMNEEFLKENNSVEYKKSKADCSRCVSYNREKQLKLKELEENKKLECESSCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KRMLSSSSEMNEEFLKENNSVEYKKSKADCSRCVSYNREKQLKLKELEENKKLECESSCI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 MNATGNPYLDDIGLLQALTEKMVLVFLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MNATGNPYLDDIGLLQALTEKMVLVFLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 GNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMCLARLLFFKDTYNIEIKEML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMCLARLLFFKDTYNIEIKEML 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 LLNLKKAISAAAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGEDNFPKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LLNLKKAISAAAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGEDNFPKQV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 FADDPDTSGFSCPVITNFELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FADDPDTSGFSCPVITNFELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQ 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 STFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 STFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVI 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 ISKYLKVSSHCNEGTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ISKYLKVSSHCNEGTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAP 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE3 HIGSDKESEQKKGQTVFKGASRRQQQKYLGKNSKPNELESVYSGDRAFIEKEPLAHLMTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HIGSDKESEQKKGQTVFKGASRRQQQKYLGKNSKPNELESVYSGDRAFIEKEPLAHLMTY 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE3 LEDTSLCQFHKAGGKPASSPGTPLSKVDFQTVPENPKRKKNVKTSKFVAFDRIINPTKDL :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: XP_016 LEDTSLCQFHKAGGKPASSPGTPLSKVDFQTVPENPKRKKYVKTSKFVAFDRIINPTKDL 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE3 YEDKNIRIPERFQKVSEQTQQCDGMRICEQAPQQALPQSFPKPGTQGHTKNLLRPTKLNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YEDKNIRIPERFQKVSEQTQQCDGMRICEQAPQQALPQSFPKPGTQGHTKNLLRPTKLNL 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE3 QKSNRNSLLALGSNKNPRNKDILDKIKSKAKETKRNDDKGDHTYRLISVVSHLGKTLKSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QKSNRNSLLALGSNKNPRNKDILDKIKSKAKETKRNDDKGDHTYRLISVVSHLGKTLKSG 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE3 HYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDRRCTGYIFFYMHNEIFEEMLKREENAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDRRCTGYIFFYMHNEIFEEMLKREENAQ 850 860 870 880 890 900 910 pF1KE3 LNSKEVEETLQKE ::::::::::::: XP_016 LNSKEVEETLQKE 910 >>NP_065954 (OMIM: 609546) ubiquitin carboxyl-terminal h (922 aa) initn: 2104 init1: 1067 opt: 1690 Z-score: 1633.5 bits: 313.5 E(85289): 3e-84 Smith-Waterman score: 2399; 46.4% identity (70.7% similar) in 920 aa overlap (1-905:1-904) 10 20 30 40 50 pF1KE3 MAALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKY-STFRLSDNIQNV : .: . ::.:: . :::..: :::.::.:.:.:. .::. :::::. :.::.::..: NP_065 MISLKVCGFIQIWSQKTGMTKLKEALIETVQRQKEIKLVVTFKSGKFIRIFQLSNNIRSV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 VLKSYRGNQNHLHLTLQNNNGLFIEGLSSTDAEQLKIFLDRVHQNEVQPPVRPGKGGSVF ::. . :.::.:::.:: :::. :: ::.::..::: .:::. : :.. ::: NP_065 VLRHCKKRQSHLRLTLKNNVFLFIDKLSYRDAKQLNMFLDIIHQNKSQQPMKSDDDWSVF 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 SSTTQ-KEINKTSFHKVDEKSSSKSFEIAKGSGTGVLQRMPLLTSKLTLTCGE-LSENQH : .. :::.::::... .: : :.:::. :: . . ::: NP_065 ESRNMLKEIDKTSFYSICNKPS--------------YQKMPLFMSKSPTHVKKGILENQG 130 140 150 160 180 190 200 210 220 230 pF1KE3 KKRKRMLSSSSEMNEEFLKENNSVEYKKSKADCSRCVSYNREKQLKLKELEENKKLECES : . :::. . ::..:::.: : :: :.: . .. ::.. .:..::... :. NP_065 GKGQNTLSSDVQTNEDILKEDNPVPNKKYKTDSLKYIQSNRKNPSSLEDLEKDRDLKLGP 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE3 SCIMNATGNPYLDDIGL-LQALTEKMVLVFLLQQGYSDGYTKWDKLKLFFELFPEKICHG : : .::: ::. : :.:. : :. :. .:.: . .: .. .. ... .: NP_065 SFNTNCNGNPNLDETVLATQTLNAKNGLTSPLEPEHSQGDPRCNKAQVPLDSHSQQLQQG 230 240 250 260 270 280 300 310 320 330 340 350 pF1KE3 LPNLGNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMCLARLLFFKDTYNIEI .::::::::::::::::..:::::::::.:. :: ::..:: : :..:: .:: . .: NP_065 FPNLGNTCYMNAVLQSLFAIPSFADDLLTQGVPWEYIPFEALIMTLTQLLALKDFCSTKI 290 300 310 320 330 340 360 370 380 390 400 410 pF1KE3 KEMLLLNLKKAISAAAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGEDNF :. :: :.::.:::.:::: :: ::::::::..::::::..:::::. . .: :..: NP_065 KRELLGNVKKVISAVAEIFSGNMQNDAHEFLGQCLDQLKEDMEKLNATLNTGKECGDENS 350 360 370 380 390 400 420 430 440 450 460 470 pF1KE3 PKQVFADDPDTSGFSCPVITNFELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHP :. . . :. : :::..:::.:: :. :::::...::.: :::::::: :. : : NP_065 SPQMHVGSAATKVFVCPVVANFEFELQLSLICKACGHAVLKVEPNNYLSINLHQETKPLP 410 420 430 440 450 460 480 490 500 510 520 530 pF1KE3 SSIQSTFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKND :::...:::: :::::.: :..:. :. :.:::: :.::.::::::.:. : ::. NP_065 LSIQNSLDLFFKEEELEYNCQMCKQKSCVARHTFSRLSRVLIIHLKRYSFNNAWLLVKNN 470 480 490 500 510 520 540 550 560 570 580 590 pF1KE3 QEVIISKYLKVSSHCNEGTRPPLPLSEDGEITDFQLLKVIRKMTS---GNISVSWPATKE ..: : : :..::.:::.:.:::::: .. . ..:.: ..: : . .. : :.: NP_065 EQVYIPKSLSLSSYCNESTKPPLPLSSSAPVGKCEVLEVSQEMISEINSPLTPSMKLTSE 530 540 550 560 570 580 600 610 620 630 640 650 pF1KE3 SKDILAPHIGSDKESEQKKGQTVFKGASRRQQQKYLGKNSKPNELESVYSGDRAFIEKE- :.: :. . ::... .. : ::..:.:. : .:.. : : :. :::. ::: NP_065 SSDSLVLPVEPDKNADLQRFQRDCGDASQEQHQRDL-ENGSALESELVHFRDRAIGEKEL 590 600 610 620 630 640 660 670 680 690 700 710 pF1KE3 PLAHLMTYLEDTSLCQFHKAGGKPASSPGTPLSKVDFQTVPENPKRKKNVKTSKFVAF-- :.: . : :: ... ::: ::: : : .: .: ::..:. .: ::. :: : NP_065 PVADSLMDQGDISLPVMYEDGGKLISSPDTRLVEVHLQEVPQHPELQKYEKTNTFVEFNF 650 660 670 680 690 700 720 730 740 750 760 770 pF1KE3 DRIINPTKDLYEDKNIRIPERFQKVSEQTQQCDGMRICEQAPQQALPQSFPKPGTQGHTK : . . :. .:. :. :::: : ..:: ::: : .. ::: : . : .: ::. NP_065 DSVTESTNGFYDCKENRIPEGSQGMAEQLQQCIEESIIDEFLQQAPPPGVRKLDAQEHTE 710 720 730 740 750 760 780 790 800 810 820 pF1KE3 NLL-RPTKLNLQKSNRNSLLALGSNKNPRNKDILD--KIKSKAKETKRNDDKGD--HTYR . : . :.: :::.. : : ::::. :: ::.::: . ...::: :: :: ..:: NP_065 ETLNQSTELRLQKADLNHLGALGSD-NPGNKNILDAENTRGEAKELTRNVKMGDPLQAYR 770 780 790 800 810 820 830 840 850 860 870 880 pF1KE3 LISVVSHLGKTLKSGHYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDRRCTGYIFFYMH :::::::.:.. .::::: :.:::.:: ::::.:. : :.:..::: : .:::::::: NP_065 LISVVSHIGSSPNSGHYISDVYDFQKQAWFTYNDLCVSEISETKMQEARLHSGYIFFYMH 830 840 850 860 870 880 890 900 910 pF1KE3 NEIFEEMLKREENAQLNSKEVEETLQKE : ::::.:.. ::..: : . NP_065 NGIFEELLRKAENSRLPSTQAGVIPQGEYEGDSLYRPA 890 900 910 920 >>XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa) initn: 232 init1: 119 opt: 255 Z-score: 248.7 bits: 57.3 E(85289): 4.1e-07 Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:588-827) 270 280 290 300 310 320 pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN :: :::::::::..:: : . : .:: .: XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN 560 570 580 590 600 610 330 340 350 360 370 380 pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ .. : . : ... ...: .. . . . ..: .:. . : : .: XP_016 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 620 630 640 650 660 670 390 400 410 420 430 pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF .:..:.: .: :.....: .. . : : .. :.: : . . ... : XP_016 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF 680 690 700 710 720 730 440 450 460 470 480 490 pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY . .. .. : .: . : :::. : . : ..:. . :: :.: .. XP_016 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF 740 750 760 770 780 790 500 510 520 530 540 550 pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE :..:. .. :. . .:: .:.:::::.: . XP_016 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG 800 810 820 830 840 850 560 570 580 590 600 610 pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG XP_016 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI 860 870 880 890 900 910 >>XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa) initn: 232 init1: 119 opt: 255 Z-score: 248.7 bits: 57.3 E(85289): 4.1e-07 Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:588-827) 270 280 290 300 310 320 pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN :: :::::::::..:: : . : .:: .: XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN 560 570 580 590 600 610 330 340 350 360 370 380 pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ .. : . : ... ...: .. . . . ..: .:. . : : .: XP_016 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 620 630 640 650 660 670 390 400 410 420 430 pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF .:..:.: .: :.....: .. . : : .. :.: : . . ... : XP_016 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF 680 690 700 710 720 730 440 450 460 470 480 490 pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY . .. .. : .: . : :::. : . : ..:. . :: :.: .. XP_016 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF 740 750 760 770 780 790 500 510 520 530 540 550 pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE :..:. .. :. . .:: .:.:::::.: . XP_016 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG 800 810 820 830 840 850 560 570 580 590 600 610 pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG XP_016 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI 860 870 880 890 900 910 >>NP_001269978 (OMIM: 603158) ubiquitin carboxyl-termina (1012 aa) initn: 265 init1: 119 opt: 255 Z-score: 248.2 bits: 57.3 E(85289): 4.4e-07 Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:672-911) 270 280 290 300 310 320 pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN :: :::::::::..:: : . : .:: .: NP_001 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN 650 660 670 680 690 700 330 340 350 360 370 380 pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ .. : . : ... ...: .. . . . ..: .:. . : : .: NP_001 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 710 720 730 740 750 760 390 400 410 420 430 pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF .:..:.: .: :.....: .. . : : .. :.: : . . ... : NP_001 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF 770 780 790 800 810 820 440 450 460 470 480 490 pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY . .. .. : .: . : :::. : . : ..:. . :: :.: .. NP_001 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF 830 840 850 860 870 500 510 520 530 540 550 pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE :..:. .. :. . .:: .:.:::::.: . NP_001 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG 880 890 900 910 920 930 560 570 580 590 600 610 pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG NP_001 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI 940 950 960 970 980 990 >>XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa) initn: 265 init1: 119 opt: 255 Z-score: 247.7 bits: 57.3 E(85289): 4.7e-07 Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:749-988) 270 280 290 300 310 320 pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN :: :::::::::..:: : . : .:: .: XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN 720 730 740 750 760 770 330 340 350 360 370 380 pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ .. : . : ... ...: .. . . . ..: .:. . : : .: XP_016 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 780 790 800 810 820 830 390 400 410 420 430 pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF .:..:.: .: :.....: .. . : : .. :.: : . . ... : XP_016 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF 840 850 860 870 880 890 440 450 460 470 480 490 pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY . .. .. : .: . : :::. : . : ..:. . :: :.: .. XP_016 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF 900 910 920 930 940 950 500 510 520 530 540 550 pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE :..:. .. :. . .:: .:.:::::.: . XP_016 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG 960 970 980 990 1000 1010 560 570 580 590 600 610 pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG XP_016 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI 1020 1030 1040 1050 1060 1070 >>XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa) initn: 265 init1: 119 opt: 255 Z-score: 247.7 bits: 57.3 E(85289): 4.7e-07 Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:749-988) 270 280 290 300 310 320 pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN :: :::::::::..:: : . : .:: .: XP_006 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN 720 730 740 750 760 770 330 340 350 360 370 380 pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ .. : . : ... ...: .. . . . ..: .:. . : : .: XP_006 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 780 790 800 810 820 830 390 400 410 420 430 pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF .:..:.: .: :.....: .. . : : .. :.: : . . ... : XP_006 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF 840 850 860 870 880 890 440 450 460 470 480 490 pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY . .. .. : .: . : :::. : . : ..:. . :: :.: .. XP_006 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF 900 910 920 930 940 950 500 510 520 530 540 550 pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE :..:. .. :. . .:: .:.:::::.: . XP_006 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG 960 970 980 990 1000 1010 560 570 580 590 600 610 pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG XP_006 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI 1020 1030 1040 1050 1060 1070 >>XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa) initn: 265 init1: 119 opt: 255 Z-score: 247.7 bits: 57.3 E(85289): 4.7e-07 Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:749-988) 270 280 290 300 310 320 pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN :: :::::::::..:: : . : .:: .: XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN 720 730 740 750 760 770 330 340 350 360 370 380 pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ .. : . : ... ...: .. . . . ..: .:. . : : .: XP_016 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 780 790 800 810 820 830 390 400 410 420 430 pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF .:..:.: .: :.....: .. . : : .. :.: : . . ... : XP_016 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF 840 850 860 870 880 890 440 450 460 470 480 490 pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY . .. .. : .: . : :::. : . : ..:. . :: :.: .. XP_016 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF 900 910 920 930 940 950 500 510 520 530 540 550 pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE :..:. .. :. . .:: .:.:::::.: . XP_016 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG 960 970 980 990 1000 1010 560 570 580 590 600 610 pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG XP_016 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI 1020 1030 1040 1050 1060 1070 >>XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa) initn: 265 init1: 119 opt: 255 Z-score: 247.7 bits: 57.3 E(85289): 4.7e-07 Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:749-988) 270 280 290 300 310 320 pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN :: :::::::::..:: : . : .:: .: XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN 720 730 740 750 760 770 330 340 350 360 370 380 pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ .. : . : ... ...: .. . . . ..: .:. . : : .: XP_016 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 780 790 800 810 820 830 390 400 410 420 430 pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF .:..:.: .: :.....: .. . : : .. :.: : . . ... : XP_016 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF 840 850 860 870 880 890 440 450 460 470 480 490 pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY . .. .. : .: . : :::. : . : ..:. . :: :.: .. XP_016 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF 900 910 920 930 940 950 500 510 520 530 540 550 pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE :..:. .. :. . .:: .:.:::::.: . XP_016 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG 960 970 980 990 1000 1010 560 570 580 590 600 610 pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG XP_016 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI 1020 1030 1040 1050 1060 1070 913 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 06:26:47 2016 done: Tue Nov 8 06:26:49 2016 Total Scan time: 12.300 Total Display time: 0.150 Function used was FASTA [36.3.4 Apr, 2011]