FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1639, 152 aa 1>>>pF1KE1639 152 - 152 aa - 152 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7217+/-0.000326; mu= 14.5191+/- 0.020 mean_var=55.5197+/-11.246, 0's: 0 Z-trim(115.0): 41 B-trim: 146 in 1/48 Lambda= 0.172128 statistics sampled from 25124 (25165) to 25124 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.295), width: 16 Scan time: 5.020 The best scores are: opt bits E(85289) NP_002659 (OMIM: 300112) proteolipid protein 2 [Ho ( 152) 1020 260.9 5.7e-70 NP_612469 (OMIM: 607888) CKLF-like MARVEL transmem ( 156) 255 70.9 9e-13 XP_016876442 (OMIM: 607888) PREDICTED: CKLF-like M ( 156) 255 70.9 9e-13 XP_016876443 (OMIM: 607888) PREDICTED: CKLF-like M ( 156) 255 70.9 9e-13 NP_853531 (OMIM: 607886) CKLF-like MARVEL transmem ( 182) 217 61.5 7.1e-10 XP_006721194 (OMIM: 607886) PREDICTED: CKLF-like M ( 182) 217 61.5 7.1e-10 NP_653202 (OMIM: 607886) CKLF-like MARVEL transmem ( 182) 217 61.5 7.1e-10 NP_612419 (OMIM: 607890) CKLF-like MARVEL transmem ( 175) 192 55.3 5.1e-08 NP_852662 (OMIM: 607887) CKLF-like MARVEL transmem ( 208) 175 51.1 1.1e-06 XP_016878443 (OMIM: 607887) PREDICTED: CKLF-like M ( 221) 175 51.2 1.1e-06 NP_848933 (OMIM: 607887) CKLF-like MARVEL transmem ( 234) 175 51.2 1.2e-06 XP_016861135 (OMIM: 607890) PREDICTED: CKLF-like M ( 179) 172 50.3 1.6e-06 XP_011531621 (OMIM: 607890) PREDICTED: CKLF-like M ( 151) 171 50.1 1.7e-06 NP_443725 (OMIM: 607884) CKLF-like MARVEL transmem ( 286) 170 50.0 3.3e-06 NP_001032365 (OMIM: 607888) CKLF-like MARVEL trans ( 125) 161 47.5 8e-06 XP_011521184 (OMIM: 607887) PREDICTED: CKLF-like M ( 179) 159 47.1 1.5e-05 NP_001275675 (OMIM: 607888) CKLF-like MARVEL trans ( 223) 159 47.2 1.8e-05 NP_851786 (OMIM: 607884) CKLF-like MARVEL transmem ( 169) 156 46.4 2.4e-05 NP_851785 (OMIM: 607884) CKLF-like MARVEL transmem ( 231) 147 44.2 0.00015 NP_851787 (OMIM: 607884) CKLF-like MARVEL transmem ( 114) 133 40.5 0.00092 NP_058647 (OMIM: 616074) chemokine-like factor iso ( 152) 131 40.1 0.0016 NP_653274 (OMIM: 607885) CKLF-like MARVEL transmem ( 248) 133 40.8 0.0017 >>NP_002659 (OMIM: 300112) proteolipid protein 2 [Homo s (152 aa) initn: 1020 init1: 1020 opt: 1020 Z-score: 1377.1 bits: 260.9 E(85289): 5.7e-70 Smith-Waterman score: 1020; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152) 10 20 30 40 50 60 pF1KE1 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVIEMILA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVIEMILA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLI 70 80 90 100 110 120 130 140 150 pF1KE1 ATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV :::::::::::::::::::::::::::::::: NP_002 ATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV 130 140 150 >>NP_612469 (OMIM: 607888) CKLF-like MARVEL transmembran (156 aa) initn: 225 init1: 202 opt: 255 Z-score: 350.3 bits: 70.9 E(85289): 9e-13 Smith-Waterman score: 255; 35.7% identity (73.2% similar) in 112 aa overlap (19-130:29-139) 10 20 30 40 50 pF1KE1 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYS : ..::::: .:. : :.:.:::.:: .: NP_612 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 SLSVIEMILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHS . ...:.... :. .: . . .. :::: ::.: . : :..:..:..... : . . NP_612 AAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTSR-DGA 70 80 90 100 110 120 130 140 150 pF1KE1 KIVAGVLGLIATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV :.: :.:.: . .:.:::. NP_612 AIAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ 120 130 140 150 >>XP_016876442 (OMIM: 607888) PREDICTED: CKLF-like MARVE (156 aa) initn: 225 init1: 202 opt: 255 Z-score: 350.3 bits: 70.9 E(85289): 9e-13 Smith-Waterman score: 255; 35.7% identity (73.2% similar) in 112 aa overlap (19-130:29-139) 10 20 30 40 50 pF1KE1 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYS : ..::::: .:. : :.:.:::.:: .: XP_016 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 SLSVIEMILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHS . ...:.... :. .: . . .. :::: ::.: . : :..:..:..... : . . XP_016 AAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTSR-DGA 70 80 90 100 110 120 130 140 150 pF1KE1 KIVAGVLGLIATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV :.: :.:.: . .:.:::. XP_016 AIAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ 120 130 140 150 >>XP_016876443 (OMIM: 607888) PREDICTED: CKLF-like MARVE (156 aa) initn: 225 init1: 202 opt: 255 Z-score: 350.3 bits: 70.9 E(85289): 9e-13 Smith-Waterman score: 255; 35.7% identity (73.2% similar) in 112 aa overlap (19-130:29-139) 10 20 30 40 50 pF1KE1 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYS : ..::::: .:. : :.:.:::.:: .: XP_016 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 SLSVIEMILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHS . ...:.... :. .: . . .. :::: ::.: . : :..:..:..... : . . XP_016 AAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTSR-DGA 70 80 90 100 110 120 130 140 150 pF1KE1 KIVAGVLGLIATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV :.: :.:.: . .:.:::. XP_016 AIAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ 120 130 140 150 >>NP_853531 (OMIM: 607886) CKLF-like MARVEL transmembran (182 aa) initn: 218 init1: 152 opt: 217 Z-score: 298.3 bits: 61.5 E(85289): 7.1e-10 Smith-Waterman score: 217; 31.8% identity (64.3% similar) in 129 aa overlap (8-133:23-151) 10 20 30 40 pF1KE1 MADSERLSAPGCWA--ACTNFSRTRKGILLFAEIILCLVILICFS ..:: : : . :: ::.:: : .. .::. NP_853 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 ASTPG-YSSLSVIEMILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVV ::. . . . ..:..:: :. . .:. : . :: ::.: . ::..:. ::.. NP_853 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 70 80 90 100 110 120 110 120 130 140 150 pF1KE1 LVERGNHSKIVAGVLGLIATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV ... .. .. .:::.:..:: .:. : :. : NP_853 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD 130 140 150 160 170 180 NP_853 SD >>XP_006721194 (OMIM: 607886) PREDICTED: CKLF-like MARVE (182 aa) initn: 218 init1: 152 opt: 217 Z-score: 298.3 bits: 61.5 E(85289): 7.1e-10 Smith-Waterman score: 217; 31.8% identity (64.3% similar) in 129 aa overlap (8-133:23-151) 10 20 30 40 pF1KE1 MADSERLSAPGCWA--ACTNFSRTRKGILLFAEIILCLVILICFS ..:: : : . :: ::.:: : .. .::. XP_006 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 ASTPG-YSSLSVIEMILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVV ::. . . . ..:..:: :. . .:. : . :: ::.: . ::..:. ::.. XP_006 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 70 80 90 100 110 120 110 120 130 140 150 pF1KE1 LVERGNHSKIVAGVLGLIATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV ... .. .. .:::.:..:: .:. : :. : XP_006 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD 130 140 150 160 170 180 XP_006 SD >>NP_653202 (OMIM: 607886) CKLF-like MARVEL transmembran (182 aa) initn: 218 init1: 152 opt: 217 Z-score: 298.3 bits: 61.5 E(85289): 7.1e-10 Smith-Waterman score: 217; 31.8% identity (64.3% similar) in 129 aa overlap (8-133:23-151) 10 20 30 40 pF1KE1 MADSERLSAPGCWA--ACTNFSRTRKGILLFAEIILCLVILICFS ..:: : : . :: ::.:: : .. .::. NP_653 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 ASTPG-YSSLSVIEMILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVV ::. . . . ..:..:: :. . .:. : . :: ::.: . ::..:. ::.. NP_653 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 70 80 90 100 110 120 110 120 130 140 150 pF1KE1 LVERGNHSKIVAGVLGLIATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV ... .. .. .:::.:..:: .:. : :. : NP_653 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD 130 140 150 160 170 180 NP_653 SD >>NP_612419 (OMIM: 607890) CKLF-like MARVEL transmembran (175 aa) initn: 201 init1: 97 opt: 192 Z-score: 265.0 bits: 55.3 E(85289): 5.1e-08 Smith-Waterman score: 192; 28.6% identity (65.1% similar) in 126 aa overlap (18-135:39-164) 10 20 30 40 pF1KE1 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSAST- .. ::. ..: :... :. .:: .: NP_612 RTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAFICVRSSLW 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 PGYSSLSVIE------MILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSI .::. : .: .:. :..:.. .. . :.:: :.... ::...: ::.:: NP_612 TNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGTLLLLIASI 70 80 90 100 110 120 110 120 130 140 150 pF1KE1 VVLVERGNHSKIVAG-VLGLIATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV :. . :.: .::: ..:..:: : . .... . NP_612 VAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV 130 140 150 160 170 >>NP_852662 (OMIM: 607887) CKLF-like MARVEL transmembran (208 aa) initn: 162 init1: 100 opt: 175 Z-score: 241.1 bits: 51.1 E(85289): 1.1e-06 Smith-Waterman score: 175; 28.2% identity (66.9% similar) in 124 aa overlap (18-131:48-170) 10 20 30 40 pF1KE1 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFS---A .. : : : :..:: :. .::. : NP_852 SMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVAQVILALIAFICIETIMA 20 30 40 50 60 70 50 60 70 80 90 pF1KE1 STP--G---YSSLSVIEMILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITS .: : . .: ........... .:: .:: ::: .:. : ..:.:..:.: NP_852 CSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFFIAS 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE1 IVV--LVERGNHSKIVAGVLGLIATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV ::. : .:.. ..:.: ..:..:: .. .... NP_852 IVLAALNHRAG-AEIAAVIFGFLATAAYAVNTFLAVQKWRVSVRQQSTNDYIRARTESRD 140 150 160 170 180 190 NP_852 VDSRPEIQRLDT 200 >>XP_016878443 (OMIM: 607887) PREDICTED: CKLF-like MARVE (221 aa) initn: 162 init1: 100 opt: 175 Z-score: 240.7 bits: 51.2 E(85289): 1.1e-06 Smith-Waterman score: 175; 28.2% identity (66.9% similar) in 124 aa overlap (18-131:48-170) 10 20 30 40 pF1KE1 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFS---A .. : : : :..:: :. .::. : XP_016 SMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVAQVILALIAFICIETIMA 20 30 40 50 60 70 50 60 70 80 90 pF1KE1 STP--G---YSSLSVIEMILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITS .: : . .: ........... .:: .:: ::: .:. : ..:.:..:.: XP_016 CSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFFIAS 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE1 IVV--LVERGNHSKIVAGVLGLIATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV ::. : .:.. ..:.: ..:..:: .. .... XP_016 IVLAALNHRAG-AEIAAVIFGFLATAAYAVNTFLAVQKWRVSVRQQSTNDYIRARTESRD 140 150 160 170 180 190 XP_016 VDSRPEIQRLDTLNWKPNGHQQVKG 200 210 220 152 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:42:58 2016 done: Sun Nov 6 09:42:58 2016 Total Scan time: 5.020 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]