FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6893, 365 aa 1>>>pF1KE6893 365 - 365 aa - 365 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3602+/-0.000785; mu= 16.7362+/- 0.047 mean_var=71.4254+/-13.976, 0's: 0 Z-trim(108.6): 7 B-trim: 50 in 1/50 Lambda= 0.151757 statistics sampled from 10323 (10327) to 10323 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.317), width: 16 Scan time: 2.150 The best scores are: opt bits E(32554) CCDS12733.1 FUT1 gene_id:2523|Hs108|chr19 ( 365) 2569 571.4 4.3e-163 CCDS33069.1 FUT2 gene_id:2524|Hs108|chr19 ( 343) 1413 318.3 6.3e-87 >>CCDS12733.1 FUT1 gene_id:2523|Hs108|chr19 (365 aa) initn: 2569 init1: 2569 opt: 2569 Z-score: 3041.5 bits: 571.4 E(32554): 4.3e-163 Smith-Waterman score: 2569; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365) 10 20 30 40 50 60 pF1KE6 MWLRSHRQLCLAFLLVCVLSVIFFLHIHQDSFPHGLGLSILCPDRRLVTPPVAIFCLPGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MWLRSHRQLCLAFLLVCVLSVIFFLHIHQDSFPHGLGLSILCPDRRLVTPPVAIFCLPGT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQYATLLALAQLNGRRAFILPAMHAAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 AMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQYATLLALAQLNGRRAFILPAMHAAL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 APVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYADLRDPFLKLSGFPCSWTFFHHLREQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 APVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYADLRDPFLKLSGFPCSWTFFHHLREQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 IRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFVGVHVRRGDYLQVMPQRWKGVVGDSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 IRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFVGVHVRRGDYLQVMPQRWKGVVGDSA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 YLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTSQGDVTFAGDGQEATPWKDFALLTQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 YLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTSQGDVTFAGDGQEATPWKDFALLTQC 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 NHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEFLKIFKPEAAFLPEWVGINADLSPLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 NHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEFLKIFKPEAAFLPEWVGINADLSPLW 310 320 330 340 350 360 pF1KE6 TLAKP ::::: CCDS12 TLAKP >>CCDS33069.1 FUT2 gene_id:2524|Hs108|chr19 (343 aa) initn: 1436 init1: 866 opt: 1413 Z-score: 1674.0 bits: 318.3 E(32554): 6.3e-87 Smith-Waterman score: 1413; 67.7% identity (85.4% similar) in 294 aa overlap (66-359:49-340) 40 50 60 70 80 90 pF1KE6 LGLSILCPDRRLVTPPVAIFCLPGTAMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQ ::.: :..: : ::. ::.:::::. CCDS33 VFTVSTIFHVQQRLAKIQAMWELPVQIPVLASTSKALGPSQLRGMWTINAIGRLGNQMGE 20 30 40 50 60 70 100 110 120 130 140 150 pF1KE6 YATLLALAQLNGRRAFILPAMHAALAPVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYA :::: :::..::: ::: ::..:::.:::::::: . :: ::.. .:.::: ::: CCDS33 YATLYALAKMNGRPAFIPAQMHSTLAPIFRITLPVLHSATASRIPWQNYHLNDWMEEEYR 80 90 100 110 120 130 160 170 180 190 200 210 pF1KE6 DLRDPFLKLSGFPCSWTFFHHLREQIRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFV . .....:.::::::.::::..: .:::::::.:::::. : :... :.:: ::: CCDS33 HIPGEYVRFTGYPCSWTFYHHLRQEILQEFTLHDHVREEAQKFLRGLQVN--GSRPGTFV 140 150 160 170 180 190 220 230 240 250 260 270 pF1KE6 GVHVRRGDYLQVMPQRWKGVVGDSAYLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTS :::::::::..:::. :::::.: ::.::.::::::. . .:::::::: ::.:::::: CCDS33 GVHVRRGDYVHVMPKVWKGVVADRRYLQQALDWFRARYSSLIFVVTSNGMAWCRENIDTS 200 210 220 230 240 250 280 290 300 310 320 330 pF1KE6 QGDVTFAGDGQEATPWKDFALLTQCNHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEF .:::.::::: :..: ::::::::::::::::::::.:::::.::::.::::.::::: : CCDS33 HGDVVFAGDGIEGSPAKDFALLTQCNHTIMTIGTFGIWAAYLTGGDTIYLANYTLPDSPF 260 270 280 290 300 310 340 350 360 pF1KE6 LKIFKPEAAFLPEWVGINADLSPLWTLAKP ::::::::::::::.:: :::::: CCDS33 LKIFKPEAAFLPEWTGIAADLSPLLKH 320 330 340 365 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:17:10 2016 done: Tue Nov 8 03:17:10 2016 Total Scan time: 2.150 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]