(Circular) (Six-base) MAPSORT of: pFN21AE3611.seq Check: 8054 from: 1 to: 4990 pFN21AE3611 4990 bp With 182 enzymes: SgfI * December 28, 2011 15:25 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2057 2057 Size: 4990 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2800 278 Size: 53 83 186 936 1264 2468 Fragments arranged by size: 2468 1264 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2333 1937 Size: 396 4594 Acc65I G'GTAC_C Cuts at: 2311 2311 Size: 4990 AclI AA'CG_TT Cuts at: 1563 3117 3490 1563 Size: 1554 373 3063 Fragments arranged by size: 3063 1554 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3053 4437 4705 1632 Size: 1421 1384 268 1917 Fragments arranged by size: 1917 1421 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4793 AflIII A'CryG_T Cuts at: 1203 3889 4866 1203 Size: 2686 977 1327 Fragments arranged by size: 2686 1327 977 AgeI A'CCGG_T Cuts at: 3821 3821 Size: 4990 AhdI GACnn_n'nnGTC Cuts at: 3719 3719 Size: 4990 AleI CACnn'nnGTG Cuts at: 1166 2051 1166 Size: 885 4105 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2038 1184 Size: 854 4136 AlwNI CAG_nnn'CTG Cuts at: 2074 2733 4305 2074 Size: 659 1572 2759 Fragments arranged by size: 2759 1572 659 ApaLI G'TGCA_C Cuts at: 3047 4203 3047 Size: 1156 3834 ApoI r'AATT_y Cuts at: 1493 2299 2525 2677 4786 1493 Size: 806 226 152 2109 1697 Fragments arranged by size: 2109 1697 806 226 152 AseI AT'TA_AT Cuts at: 160 1032 3544 160 Size: 872 2512 1606 Fragments arranged by size: 2512 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 4990 AvaI C'yCGr_G Cuts at: 1870 1943 2315 1870 Size: 73 372 4545 Fragments arranged by size: 4545 372 73 AvrII C'CTAG_G Cuts at: 2192 2192 Size: 4990 BamHI G'GATC_C Cuts at: 2320 2687 2320 Size: 367 4623 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2081 2311 3766 618 Size: 325 217 627 294 230 1455 1842 Fragments arranged by size: 1842 1455 627 325 294 230 217 BanII G_rGCy'C Cuts at: 1391 2095 2274 2309 1391 Size: 704 179 35 4072 Fragments arranged by size: 4072 704 179 35 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4019 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3181 3215 1903 Size: 34 1244 34 3678 Fragments arranged by size: 3678 1244 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2882 4092 2882 Size: 1210 3780 BclI T'GATC_A Cuts at: 1548 1548 Size: 4990 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3601 136 Size: 107 122 71 631 605 1929 1525 Fragments arranged by size: 1929 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 4985 4985 Size: 4990 BlpI GC'TnA_GC Cuts at: 2273 2407 2273 Size: 134 4856 Bme1580I G_kGCm'C Cuts at: 1790 2086 3051 4207 1790 Size: 296 965 1156 2573 Fragments arranged by size: 2573 1156 965 296 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 4990 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2140 2721 3679 Size: 416 53 83 399 24 723 581 958 Cuts at: 3679 442 Size: 1753 Fragments arranged by size: 1753 958 723 581 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 4990 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2120 3650 1239 Size: 881 1530 2579 Fragments arranged by size: 2579 1530 881 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3115 3980 4278 3115 Size: 865 298 3827 Fragments arranged by size: 3827 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3653 882 Size: 617 2154 2219 Fragments arranged by size: 2219 2154 617 BsaAI yAC'GTr Cuts at: 493 1204 2781 493 Size: 711 1577 2702 Fragments arranged by size: 2702 1577 711 BsaBI GATnn'nnATC Cuts at: 4984 4984 Size: 4990 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2797 3179 3814 275 Size: 53 83 186 936 1264 382 635 1451 Fragments arranged by size: 1451 1264 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3423 3821 4095 4242 4653 3423 Size: 398 274 147 411 3760 Fragments arranged by size: 3760 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2093 2123 2228 2258 1178 Size: 30 165 30 690 30 105 30 3910 Fragments arranged by size: 3910 690 165 105 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 4990 BseYI C'CCAG_C Cuts at: 2077 4193 4689 2077 Size: 2116 496 2378 Fragments arranged by size: 2378 2116 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4417 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2440 3201 4229 1540 Size: 275 186 439 761 1028 2301 Fragments arranged by size: 2301 1028 761 439 275 186 BsiHKAI G_wGCw'C Cuts at: 2274 3051 3136 4207 2274 Size: 777 85 1071 3057 Fragments arranged by size: 3057 1071 777 85 BsmI GAATG_Cn' Cuts at: 2501 2594 2501 Size: 93 4897 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2086 2095 2274 2309 3051 3136 4207 Size: 399 296 9 179 35 742 85 1071 Cuts at: 4207 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 399 296 179 85 35 9 BspEI T'CCGG_A Cuts at: 4653 4653 Size: 4990 BspHI T'CATG_A Cuts at: 2879 4609 2879 Size: 1730 3260 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2057 2345 844 Size: 1213 288 3489 Fragments arranged by size: 3489 1213 288 BsrBI CCG'CTC Cuts at: 1394 1823 2877 1394 Size: 429 1054 3507 Fragments arranged by size: 3507 1054 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3485 3659 65 Size: 1183 2237 174 1396 Fragments arranged by size: 2237 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3634 3821 1700 Size: 110 1824 187 2869 Fragments arranged by size: 2869 1824 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 4990 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 4990 BssSI C'ACGA_G Cuts at: 3050 4062 3050 Size: 1012 3978 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 4990 BstBI TT'CG_AA Cuts at: 3794 3794 Size: 4990 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 4990 BstXI CCAn_nnnn'nTGG Cuts at: 2053 2053 Size: 4990 BstYI r'GATC_y Cuts at: 1972 2320 2687 3072 3089 4541 4627 4639 4985 Size: 348 367 385 17 1452 86 12 346 Cuts at: 4985 1972 Size: 1977 Fragments arranged by size: 1977 1452 385 367 348 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3499 Fragments arranged by size: 3499 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4251 Fragments arranged by size: 4251 683 56 BtsI GCAGTG_nn' Cuts at: 2072 2506 3300 3320 2072 Size: 434 794 20 3742 Fragments arranged by size: 3742 794 434 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 4990 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 4955 DraI TTT'AAA Cuts at: 2294 2294 Size: 4990 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 3997 809 Size: 507 2681 1802 Fragments arranged by size: 2681 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2007 2437 3326 Size: 54 1425 50 275 18 177 430 889 Cuts at: 3326 4955 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 430 275 177 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2437 1537 Size: 275 625 4090 Fragments arranged by size: 4090 625 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2920 1353 Size: 1567 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3577 3951 4097 387 Size: 1064 138 1988 374 146 1280 Fragments arranged by size: 1988 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2272 2272 Size: 4990 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2120 3053 3650 4437 4705 1239 Size: 393 488 933 597 787 268 1524 Fragments arranged by size: 1524 933 787 597 488 393 268 EcoO109I rG'GnC_Cy Cuts at: 2244 2244 Size: 4990 EcoRI G'AATT_C Cuts at: 2299 2677 2299 Size: 378 4612 FspI TGC'GCA Cuts at: 3496 3496 Size: 4990 HaeII r_GCGC'y Cuts at: 1678 4137 1678 Size: 2459 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2228 2260 3631 3663 3705 Size: 32 135 32 656 32 1371 32 42 Cuts at: 3705 3737 1373 Size: 32 2626 Fragments arranged by size: 2626 1371 656 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2334 2580 669 Size: 988 281 396 246 3079 Fragments arranged by size: 3079 988 396 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 4990 HpaI GTT'AAC Cuts at: 2580 2580 Size: 4990 KpnI G_GTAC'C Cuts at: 2315 2315 Size: 4990 MfeI C'AATT_G Cuts at: 2589 2589 Size: 4990 MluI A'CGCG_T Cuts at: 4866 4866 Size: 4990 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4104 4288 1305 Size: 2799 184 2007 Fragments arranged by size: 2799 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3168 Fragments arranged by size: 3168 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2051 2177 2948 3307 3466 518 Size: 648 885 126 771 359 159 2042 Fragments arranged by size: 2042 885 771 648 359 159 126 MspA1I CmG'CkG Cuts at: 1606 2156 2281 2406 3083 4231 4476 1606 Size: 550 125 125 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 550 245 125 125 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3499 Fragments arranged by size: 3499 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 4990 NheI G'CTAG_C Cuts at: 1052 1052 Size: 4990 NotI GC'GGCC_GC Cuts at: 2437 2437 Size: 4990 NspI r_CATG'y Cuts at: 1132 1229 2182 2255 2348 3893 1132 Size: 97 953 73 93 1545 2229 Fragments arranged by size: 2229 1545 953 97 93 73 PasI CC'CwG_GG Cuts at: 1348 2086 2114 2265 1348 Size: 738 28 151 4073 Fragments arranged by size: 4073 738 151 28 PciI A'CATG_T Cuts at: 3889 3889 Size: 4990 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 4990 PmeI GTTT'AAAC Cuts at: 2294 2294 Size: 4990 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3059 3091 4572 4604 3059 Size: 32 1481 32 3445 Fragments arranged by size: 3445 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2244 2244 Size: 4990 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 4990 PsiI TTA'TAA Cuts at: 2560 2560 Size: 4990 PstI C_TGCA'G Cuts at: 830 2342 830 Size: 1512 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 4990 PvuII CAG'CTG Cuts at: 2156 2156 Size: 4990 SacI G_AGCT'C Cuts at: 2274 2274 Size: 4990 SalI G'TCGA_C Cuts at: 1936 2332 1936 Size: 396 4594 SanDI GG'GwC_CC Cuts at: 2244 2244 Size: 4990 SbfI CC_TGCA'GG Cuts at: 2342 2342 Size: 4990 ScaI AGT'ACT Cuts at: 3238 4950 3238 Size: 1712 3278 SfcI C'TryA_G Cuts at: 826 1045 2066 2338 3473 4154 4345 826 Size: 219 1021 272 1135 681 191 1471 Fragments arranged by size: 1471 1135 1021 681 272 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 4990 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 4990 SmaI CCC'GGG Cuts at: 1872 2317 1872 Size: 445 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3094 3995 4257 820 Size: 197 926 1151 901 262 1553 Fragments arranged by size: 1553 1151 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2781 493 Size: 2288 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 4990 SphI G_CATG'C Cuts at: 1132 2255 2348 1132 Size: 1123 93 3774 Fragments arranged by size: 3774 1123 93 SspI AAT'ATT Cuts at: 5 52 2914 5 Size: 47 2862 2081 Fragments arranged by size: 2862 2081 47 StuI AGG'CCT Cuts at: 1517 2191 1517 Size: 674 4316 StyI C'CwwG_G Cuts at: 513 1065 2004 2192 2429 513 Size: 552 939 188 237 3074 Fragments arranged by size: 3074 939 552 237 188 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2069 3017 3034 3187 3372 3817 325 Size: 1255 489 948 17 153 185 445 1498 Fragments arranged by size: 1498 1255 948 489 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3236 4948 96 Size: 274 80 33 51 1443 1259 1712 138 Fragments arranged by size: 1712 1443 1259 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 4950 4982 4950 Size: 32 4958 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 4990 XbaI T'CTAG_A Cuts at: 2326 2326 Size: 4990 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 4990 XmaI C'CCGG_G Cuts at: 1870 2315 1870 Size: 445 4545 XmnI GAAnn'nnTTC Cuts at: 3119 3119 Size: 4990 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2798 276 Size: 53 83 186 936 1264 2468 Fragments arranged by size: 2468 1264 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI AvrII BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SacI SalI SanDI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AscI BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI RsrII SacII SapI SexAI SfiI SfoI SrfI SwaI XcmI