FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1702, 204 aa 1>>>pF1KE1702 204 - 204 aa - 204 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1700+/-0.000295; mu= 15.2665+/- 0.018 mean_var=83.3422+/-16.592, 0's: 0 Z-trim(118.8): 11 B-trim: 64 in 1/54 Lambda= 0.140489 statistics sampled from 32041 (32051) to 32041 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.376), width: 16 Scan time: 6.820 The best scores are: opt bits E(85289) NP_757373 (OMIM: 138970) granulocyte colony-stimul ( 204) 1366 285.8 3.3e-77 NP_000750 (OMIM: 138970) granulocyte colony-stimul ( 207) 1350 282.5 3.2e-76 NP_001171618 (OMIM: 138970) granulocyte colony-sti ( 168) 684 147.5 1.2e-35 NP_757374 (OMIM: 138970) granulocyte colony-stimul ( 171) 676 145.9 3.7e-35 >>NP_757373 (OMIM: 138970) granulocyte colony-stimulatin (204 aa) initn: 1366 init1: 1366 opt: 1366 Z-score: 1507.1 bits: 285.8 E(85289): 3.3e-77 Smith-Waterman score: 1366; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_757 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_757 LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_757 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG 130 140 150 160 170 180 190 200 pF1KE1 VLVASHLQSFLEVSYRVLRHLAQP :::::::::::::::::::::::: NP_757 VLVASHLQSFLEVSYRVLRHLAQP 190 200 >>NP_000750 (OMIM: 138970) granulocyte colony-stimulatin (207 aa) initn: 1352 init1: 936 opt: 1350 Z-score: 1489.5 bits: 282.5 E(85289): 3.2e-76 Smith-Waterman score: 1350; 98.6% identity (98.6% similar) in 207 aa overlap (1-204:1-207) 10 20 30 40 50 60 pF1KE1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 LQEKL---CATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG ::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR 130 140 150 160 170 180 180 190 200 pF1KE1 AGGVLVASHLQSFLEVSYRVLRHLAQP ::::::::::::::::::::::::::: NP_000 AGGVLVASHLQSFLEVSYRVLRHLAQP 190 200 >>NP_001171618 (OMIM: 138970) granulocyte colony-stimula (168 aa) initn: 683 init1: 683 opt: 684 Z-score: 761.1 bits: 147.5 E(85289): 1.2e-35 Smith-Waterman score: 1024; 82.4% identity (82.4% similar) in 204 aa overlap (1-204:1-168) 10 20 30 40 50 60 pF1KE1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ ::::: ::::::::::::::::::: NP_001 LQEKL------------------------------------AGCLSQLHSGLFLYQGLLQ 70 80 130 140 150 160 170 180 pF1KE1 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG 90 100 110 120 130 140 190 200 pF1KE1 VLVASHLQSFLEVSYRVLRHLAQP :::::::::::::::::::::::: NP_001 VLVASHLQSFLEVSYRVLRHLAQP 150 160 >>NP_757374 (OMIM: 138970) granulocyte colony-stimulatin (171 aa) initn: 1092 init1: 676 opt: 676 Z-score: 752.3 bits: 145.9 E(85289): 3.7e-35 Smith-Waterman score: 1029; 82.4% identity (82.8% similar) in 204 aa overlap (1-204:1-171) 10 20 30 40 50 60 pF1KE1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_757 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ ::::: . ::::::::::::::::::: NP_757 LQEKLVSE---------------------------------AGCLSQLHSGLFLYQGLLQ 70 80 130 140 150 160 170 180 pF1KE1 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_757 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG 90 100 110 120 130 140 190 200 pF1KE1 VLVASHLQSFLEVSYRVLRHLAQP :::::::::::::::::::::::: NP_757 VLVASHLQSFLEVSYRVLRHLAQP 150 160 170 204 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:49:33 2016 done: Sun Nov 6 09:49:34 2016 Total Scan time: 6.820 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]