FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2725, 403 aa 1>>>pF1KE2725 403 - 403 aa - 403 aa Library: /omim/omim.rfq.tfa 65089639 residues in 91964 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7256+/-0.000358; mu= 11.8816+/- 0.023 mean_var=339.5531+/-69.613, 0's: 0 Z-trim(123.6): 74 B-trim: 88 in 1/57 Lambda= 0.069602 statistics sampled from 45334 (45425) to 45334 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.494), width: 16 Scan time: 4.810 The best scores are: opt bits E(91964) NP_005351 (OMIM: 177075,601088,610202) transcripti ( 403) 2712 285.6 1.5e-76 NP_001026974 (OMIM: 177075,601088,610202) transcri ( 373) 2506 264.9 2.5e-70 XP_024306047 (OMIM: 177075,601088,610202) transcri ( 383) 2506 264.9 2.5e-70 XP_016878723 (OMIM: 177075,601088,610202) transcri ( 383) 2506 264.9 2.5e-70 XP_016878724 (OMIM: 177075,601088,610202) transcri ( 383) 2506 264.9 2.5e-70 XP_016878722 (OMIM: 177075,601088,610202) transcri ( 383) 2506 264.9 2.5e-70 NP_005452 (OMIM: 166300,608968,617041) transcripti ( 323) 706 84.1 5.9e-16 NP_963883 (OMIM: 147630,610303) transcription fact ( 353) 615 75.0 3.5e-13 XP_011535106 (OMIM: 162080,613750) neural retina-s ( 237) 432 56.3 9.6e-08 XP_005267766 (OMIM: 162080,613750) neural retina-s ( 237) 432 56.3 9.6e-08 NP_006168 (OMIM: 162080,613750) neural retina-spec ( 237) 432 56.3 9.6e-08 XP_011535104 (OMIM: 162080,613750) neural retina-s ( 237) 432 56.3 9.6e-08 NP_001341697 (OMIM: 162080,613750) neural retina-s ( 237) 432 56.3 9.6e-08 NP_001341698 (OMIM: 162080,613750) neural retina-s ( 237) 432 56.3 9.6e-08 XP_011535107 (OMIM: 162080,613750) neural retina-s ( 237) 432 56.3 9.6e-08 XP_011535103 (OMIM: 162080,613750) neural retina-s ( 339) 432 56.6 1.2e-07 NP_001341699 (OMIM: 162080,613750) neural retina-s ( 132) 411 53.8 3e-07 XP_011535108 (OMIM: 162080,613750) neural retina-s ( 234) 411 54.2 4.1e-07 NP_002350 (OMIM: 602020) transcription factor MafG ( 162) 348 47.6 2.7e-05 NP_116100 (OMIM: 602020) transcription factor MafG ( 162) 348 47.6 2.7e-05 XP_005249908 (OMIM: 600197) transcription factor M ( 156) 343 47.1 3.8e-05 NP_002351 (OMIM: 600197) transcription factor MafK ( 156) 343 47.1 3.8e-05 XP_006715836 (OMIM: 600197) transcription factor M ( 156) 343 47.1 3.8e-05 NP_036455 (OMIM: 604877) transcription factor MafF ( 164) 327 45.5 0.00012 NP_001155045 (OMIM: 604877) transcription factor M ( 164) 327 45.5 0.00012 NP_001155044 (OMIM: 604877) transcription factor M ( 164) 327 45.5 0.00012 NP_001155046 (OMIM: 604877) transcription factor M ( 135) 304 43.1 0.00053 >>NP_005351 (OMIM: 177075,601088,610202) transcription f (403 aa) initn: 2712 init1: 2712 opt: 2712 Z-score: 1495.7 bits: 285.6 E(91964): 1.5e-76 Smith-Waterman score: 2712; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403) 10 20 30 40 50 60 pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG 310 320 330 340 350 360 370 380 390 400 pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK ::::::::::::::::::::::::::::::::::::::::::: NP_005 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK 370 380 390 400 >>NP_001026974 (OMIM: 177075,601088,610202) transcriptio (373 aa) initn: 2804 init1: 2506 opt: 2506 Z-score: 1384.2 bits: 264.9 E(91964): 2.5e-70 Smith-Waterman score: 2506; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373) 10 20 30 40 50 60 pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG 310 320 330 340 350 360 370 380 390 400 pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK ::::::::::::. NP_001 SSSDNPSSPEFFM 370 >>XP_024306047 (OMIM: 177075,601088,610202) transcriptio (383 aa) initn: 2804 init1: 2506 opt: 2506 Z-score: 1384.1 bits: 264.9 E(91964): 2.5e-70 Smith-Waterman score: 2506; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373) 10 20 30 40 50 60 pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_024 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_024 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_024 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_024 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_024 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_024 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG 310 320 330 340 350 360 370 380 390 400 pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK ::::::::::::. XP_024 SSSDNPSSPEFFMYPRESSTSVM 370 380 >>XP_016878723 (OMIM: 177075,601088,610202) transcriptio (383 aa) initn: 2804 init1: 2506 opt: 2506 Z-score: 1384.1 bits: 264.9 E(91964): 2.5e-70 Smith-Waterman score: 2506; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373) 10 20 30 40 50 60 pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG 310 320 330 340 350 360 370 380 390 400 pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK ::::::::::::. XP_016 SSSDNPSSPEFFMYPRESSTSVM 370 380 >>XP_016878724 (OMIM: 177075,601088,610202) transcriptio (383 aa) initn: 2804 init1: 2506 opt: 2506 Z-score: 1384.1 bits: 264.9 E(91964): 2.5e-70 Smith-Waterman score: 2506; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373) 10 20 30 40 50 60 pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG 310 320 330 340 350 360 370 380 390 400 pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK ::::::::::::. XP_016 SSSDNPSSPEFFMYPRESSTSVM 370 380 >>XP_016878722 (OMIM: 177075,601088,610202) transcriptio (383 aa) initn: 2804 init1: 2506 opt: 2506 Z-score: 1384.1 bits: 264.9 E(91964): 2.5e-70 Smith-Waterman score: 2506; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373) 10 20 30 40 50 60 pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG 310 320 330 340 350 360 370 380 390 400 pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK ::::::::::::. XP_016 SSSDNPSSPEFFMYPRESSTSVM 370 380 >>NP_005452 (OMIM: 166300,608968,617041) transcription f (323 aa) initn: 1071 init1: 641 opt: 706 Z-score: 408.0 bits: 84.1 E(91964): 5.9e-16 Smith-Waterman score: 1125; 53.3% identity (71.1% similar) in 377 aa overlap (1-373:1-323) 10 20 30 40 50 pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPV-ETDRIISQCGRLIAGGSLSSTP ::.::.:. .::::::::::::::::.::.:::::. ...: : :: .::.:::: NP_005 MAAELSMG-PELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTP 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 MSTPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALIS .:::::::: ::::: : .:::.:::: :::.. ::.:::::...:::::::::. NP_005 LSTPCSSVPSSPSFS-P-----TEQKTHLEDLYWMASNYQQMNPEALNLTPEDAVEALIG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 NSH---QLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSG :: : .::.. :::.. . :.: .:.. NP_005 -SHPVPQPLQSFDSF-RGAHHHHHHHHPHPHHAYPGAG-----------------VAHDE 120 130 140 150 180 190 200 210 220 230 pF1KE2 AGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGG ::: : ::: ::: .. :..:.: : . .. : : :.:.. ..::.:. NP_005 LGPHAHPHHH-----HHHQASPPPSSAASPAQQLP-TSHPGPGPHATASATAAGGNGS-- 160 170 180 190 200 240 250 260 270 280 290 pF1KE2 GGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTL .:::::.:::.::::::::.::: .:.:::::::::::: NP_005 --------------------VEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTL 210 220 230 240 300 310 320 330 340 350 pF1KE2 KNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGF ::::::::::.:::::.: ::.::.::.:::..::::.:::.::::::: : :::..::: NP_005 KNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEKLANSGF 250 260 270 280 290 300 360 370 380 390 400 pF1KE2 RENGSSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK :: ::.::.:::::::. NP_005 REAGSTSDSPSSPEFFL 310 320 >>NP_963883 (OMIM: 147630,610303) transcription factor M (353 aa) initn: 909 init1: 536 opt: 615 Z-score: 358.2 bits: 75.0 E(91964): 3.5e-13 Smith-Waterman score: 1049; 50.1% identity (63.9% similar) in 399 aa overlap (1-369:1-335) 10 20 30 40 50 60 pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM ::.::::. ..::.::::.::::::::::::::::: :..:. : :: :::::::. NP_963 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL 10 20 30 40 50 70 80 90 pF1KE2 STPCSSVPPSPSFSAPSPGSG----------SEQ--------------------KAHLED :::::::: :::: :::::.: : : : ::: NP_963 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE2 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL :::.:: ..::::::...:::::::::...:. :. : . : : : : : . NP_963 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG 120 130 140 150 160 170 160 170 180 190 200 210 pF1KE2 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA ::....:: :. . :: :. :::::: :::: NP_963 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHH---------------- 180 190 200 220 230 240 250 260 270 pF1KE2 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS ::.: :::.: :: .....::::.:::.:: NP_963 ------------HHHHHGGAGHGGGAG-----------HH----VRLEERFSDDQLVSMS 210 220 230 280 290 300 310 320 330 pF1KE2 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL :::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..: NP_963 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL 240 250 260 270 280 290 340 350 360 370 380 390 pF1KE2 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFITEPTRKLEPSVGYATFW : :..::..::: ::::::::.. : ..... : : NP_963 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL 300 310 320 330 340 350 400 pF1KE2 KPQHRVLTSVFTK >>XP_011535106 (OMIM: 162080,613750) neural retina-speci (237 aa) initn: 730 init1: 413 opt: 432 Z-score: 260.6 bits: 56.3 E(91964): 9.6e-08 Smith-Waterman score: 544; 38.4% identity (52.9% similar) in 346 aa overlap (12-355:3-226) 10 20 30 40 50 60 pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM :: :::::::::::::::::::.:: : :: : ... XP_011 MALPPSPLAMEYVNDFDLMKFEVKREPSE--------GR---PGPPTASLG 10 20 30 40 70 80 90 100 110 pF1KE2 STPCSSVPPSPSFSAPSPGSGSE-QKAHLEDYYWMTGYPQQLNP-EALGFSPEDAVEALI ::: :::::::.:: :. ...: . ::. ::.. :::. ::::.:::.:.: : XP_011 STPYSSVPPSPTFSEPGMVGATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELL- 50 60 70 80 90 120 130 140 150 160 170 pF1KE2 SNSHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAG :: .::. . : XP_011 ------QG------------------------------QGPVPV--------------DG 100 180 190 200 210 220 230 pF1KE2 PHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGG :: :.. ::. : .: XP_011 PH---------GYY-------PGS------------------PEETG------------- 110 120 240 250 260 270 280 290 pF1KE2 AAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKN : : ... .:::: ::.:::::::::::: ...:..::::.:::::: XP_011 ------AQH-------VQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKN 130 140 150 160 300 310 320 330 340 350 pF1KE2 RGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRE :::::.:: ::.:::. ::.:. .: :.: :. :..::.:::: :: . ..:.::: XP_011 RGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGS 170 180 190 200 210 220 360 370 380 390 400 pF1KE2 NGSSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK XP_011 GDPSHLFL 230 >>XP_005267766 (OMIM: 162080,613750) neural retina-speci (237 aa) initn: 730 init1: 413 opt: 432 Z-score: 260.6 bits: 56.3 E(91964): 9.6e-08 Smith-Waterman score: 544; 38.4% identity (52.9% similar) in 346 aa overlap (12-355:3-226) 10 20 30 40 50 60 pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM :: :::::::::::::::::::.:: : :: : ... XP_005 MALPPSPLAMEYVNDFDLMKFEVKREPSE--------GR---PGPPTASLG 10 20 30 40 70 80 90 100 110 pF1KE2 STPCSSVPPSPSFSAPSPGSGSE-QKAHLEDYYWMTGYPQQLNP-EALGFSPEDAVEALI ::: :::::::.:: :. ...: . ::. ::.. :::. ::::.:::.:.: : XP_005 STPYSSVPPSPTFSEPGMVGATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELL- 50 60 70 80 90 120 130 140 150 160 170 pF1KE2 SNSHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAG :: .::. . : XP_005 ------QG------------------------------QGPVPV--------------DG 100 180 190 200 210 220 230 pF1KE2 PHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGG :: :.. ::. : .: XP_005 PH---------GYY-------PGS------------------PEETG------------- 110 120 240 250 260 270 280 290 pF1KE2 AAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKN : : ... .:::: ::.:::::::::::: ...:..::::.:::::: XP_005 ------AQH-------VQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKN 130 140 150 160 300 310 320 330 340 350 pF1KE2 RGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRE :::::.:: ::.:::. ::.:. .: :.: :. :..::.:::: :: . ..:.::: XP_005 RGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGS 170 180 190 200 210 220 360 370 380 390 400 pF1KE2 NGSSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK XP_005 GDPSHLFL 230 403 residues in 1 query sequences 65089639 residues in 91964 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Oct 2 18:30:41 2018 done: Tue Oct 2 18:30:42 2018 Total Scan time: 4.810 Total Display time: 0.100 Function used was FASTA [36.3.4 Apr, 2011]