FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1619, 132 aa 1>>>pF1KE1619 132 - 132 aa - 132 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0786+/-0.000262; mu= 14.0941+/- 0.016 mean_var=83.5908+/-16.222, 0's: 0 Z-trim(122.1): 5 B-trim: 130 in 2/54 Lambda= 0.140280 statistics sampled from 39693 (39698) to 39693 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.465), width: 16 Scan time: 5.430 The best scores are: opt bits E(85289) NP_001129 (OMIM: 601665,602311) agouti-related pro ( 132) 918 193.9 6.2e-50 XP_011527122 (OMIM: 600201,611742) PREDICTED: agou ( 132) 178 44.2 7.5e-05 NP_001663 (OMIM: 600201,611742) agouti-signaling p ( 132) 178 44.2 7.5e-05 XP_011527123 (OMIM: 600201,611742) PREDICTED: agou ( 132) 178 44.2 7.5e-05 XP_005260469 (OMIM: 600201,611742) PREDICTED: agou ( 136) 178 44.2 7.6e-05 >>NP_001129 (OMIM: 601665,602311) agouti-related protein (132 aa) initn: 918 init1: 918 opt: 918 Z-score: 1017.5 bits: 193.9 E(85289): 6.2e-50 Smith-Waterman score: 918; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KE1 MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQALLPELPGLGLRAPLKKTTAEQAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQALLPELPGLGLRAPLKKTTAEQAE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 EDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR 70 80 90 100 110 120 130 pF1KE1 KLGTAMNPCSRT :::::::::::: NP_001 KLGTAMNPCSRT 130 >>XP_011527122 (OMIM: 600201,611742) PREDICTED: agouti-s (132 aa) initn: 184 init1: 164 opt: 178 Z-score: 208.1 bits: 44.2 E(85289): 7.5e-05 Smith-Waterman score: 178; 32.5% identity (54.5% similar) in 123 aa overlap (10-122:9-128) 10 20 30 40 50 pF1KE1 MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQAL-------LPELPGLGLRAPLKK : ::.. :. : : : .: :..: : ..:.... : :: XP_011 MDVTRLLLATLLVFLCFFTANSHLPPEEKLR-DDRSLRSNSSVNLLDVPSVSIVALNKK 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 TTA---EQAEEDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYC . . ::. .. .: . . .. : : :. :: ..:: ::::::.: : XP_011 SKQIGRKAAEKKRSSKKEASMKKV-VRPRTPLSAP-CVATRNSCKPPAPACCDPCASCQC 60 70 80 90 100 110 120 130 pF1KE1 RFFNAFCYCRKLGTAMNPCSRT ::: . : :: : XP_011 RFFRSACSCRVLSLNC 120 130 >>NP_001663 (OMIM: 600201,611742) agouti-signaling prote (132 aa) initn: 184 init1: 164 opt: 178 Z-score: 208.1 bits: 44.2 E(85289): 7.5e-05 Smith-Waterman score: 178; 32.5% identity (54.5% similar) in 123 aa overlap (10-122:9-128) 10 20 30 40 50 pF1KE1 MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQAL-------LPELPGLGLRAPLKK : ::.. :. : : : .: :..: : ..:.... : :: NP_001 MDVTRLLLATLLVFLCFFTANSHLPPEEKLR-DDRSLRSNSSVNLLDVPSVSIVALNKK 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 TTA---EQAEEDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYC . . ::. .. .: . . .. : : :. :: ..:: ::::::.: : NP_001 SKQIGRKAAEKKRSSKKEASMKKV-VRPRTPLSAP-CVATRNSCKPPAPACCDPCASCQC 60 70 80 90 100 110 120 130 pF1KE1 RFFNAFCYCRKLGTAMNPCSRT ::: . : :: : NP_001 RFFRSACSCRVLSLNC 120 130 >>XP_011527123 (OMIM: 600201,611742) PREDICTED: agouti-s (132 aa) initn: 184 init1: 164 opt: 178 Z-score: 208.1 bits: 44.2 E(85289): 7.5e-05 Smith-Waterman score: 178; 32.5% identity (54.5% similar) in 123 aa overlap (10-122:9-128) 10 20 30 40 50 pF1KE1 MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQAL-------LPELPGLGLRAPLKK : ::.. :. : : : .: :..: : ..:.... : :: XP_011 MDVTRLLLATLLVFLCFFTANSHLPPEEKLR-DDRSLRSNSSVNLLDVPSVSIVALNKK 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 TTA---EQAEEDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYC . . ::. .. .: . . .. : : :. :: ..:: ::::::.: : XP_011 SKQIGRKAAEKKRSSKKEASMKKV-VRPRTPLSAP-CVATRNSCKPPAPACCDPCASCQC 60 70 80 90 100 110 120 130 pF1KE1 RFFNAFCYCRKLGTAMNPCSRT ::: . : :: : XP_011 RFFRSACSCRVLSLNC 120 130 >>XP_005260469 (OMIM: 600201,611742) PREDICTED: agouti-s (136 aa) initn: 184 init1: 164 opt: 178 Z-score: 207.9 bits: 44.2 E(85289): 7.6e-05 Smith-Waterman score: 178; 32.5% identity (54.5% similar) in 123 aa overlap (10-122:13-132) 10 20 30 40 50 pF1KE1 MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQAL-------LPELPGLGLRAP : ::.. :. : : : .: :..: : ..:.... : XP_005 MPPGMDVTRLLLATLLVFLCFFTANSHLPPEEKLR-DDRSLRSNSSVNLLDVPSVSIVAL 10 20 30 40 50 60 70 80 90 100 pF1KE1 LKKTTA---EQAEEDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCAT ::. . ::. .. .: . . .. : : :. :: ..:: ::::::. XP_005 NKKSKQIGRKAAEKKRSSKKEASMKKV-VRPRTPLSAP-CVATRNSCKPPAPACCDPCAS 60 70 80 90 100 110 110 120 130 pF1KE1 CYCRFFNAFCYCRKLGTAMNPCSRT : :::: . : :: : XP_005 CQCRFFRSACSCRVLSLNC 120 130 132 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:50:37 2016 done: Sun Nov 6 09:50:38 2016 Total Scan time: 5.430 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]