FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1781, 289 aa 1>>>pF1KE1781 289 - 289 aa - 289 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2858+/-0.000784; mu= 9.5071+/- 0.047 mean_var=64.7662+/-13.516, 0's: 0 Z-trim(106.9): 11 B-trim: 0 in 0/51 Lambda= 0.159368 statistics sampled from 9258 (9260) to 9258 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.284), width: 16 Scan time: 2.360 The best scores are: opt bits E(32554) CCDS9552.1 PNP gene_id:4860|Hs108|chr14 ( 289) 1953 457.7 4.6e-129 CCDS6509.1 MTAP gene_id:4507|Hs108|chr9 ( 283) 274 71.6 7.3e-13 >>CCDS9552.1 PNP gene_id:4860|Hs108|chr14 (289 aa) initn: 1953 init1: 1953 opt: 1953 Z-score: 2430.5 bits: 457.7 E(32554): 4.6e-129 Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289) 10 20 30 40 50 60 pF1KE1 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 190 200 210 220 230 240 250 260 270 280 pF1KE1 ITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIPLPDKAS ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 ITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIPLPDKAS 250 260 270 280 >>CCDS6509.1 MTAP gene_id:4507|Hs108|chr9 (283 aa) initn: 181 init1: 137 opt: 274 Z-score: 344.4 bits: 71.6 E(32554): 7.3e-13 Smith-Waterman score: 274; 27.5% identity (58.8% similar) in 262 aa overlap (26-283:11-256) 10 20 30 40 50 60 pF1KE1 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST ...:: :.:: .. ... : . : : . CCDS65 MASGTTTTAVKIGIIGGTGLD--DPEILEGRTEKYVDTP-FGK-- 10 20 30 40 70 80 90 100 110 pF1KE1 VPGHAGRLVFGFLNGRACVMM--QGRFHMYEGYPLWKVTFPVRVFHLL--GVDTLVVTNA :. : :..: ... ::.. .:: : .: ::.. . .. : : ..::.: CCDS65 -PSDA--LILGKIKNVDCVLLARHGRQHTI--MPS-KVNYQANIWALKEEGCTHVIVTTA 50 60 70 80 90 120 130 140 150 160 170 pF1KE1 AGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALS :.: ... :::..: . :. . :. : .. : :.. . :. . CCDS65 CGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIE 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE1 TWKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVF : :..: : ..::.: . :: : . :: ... :::...:.:::::..:.. :. CCDS65 TAKKLG-LRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYA 160 170 180 190 200 210 240 250 260 270 280 pF1KE1 GFSLITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIPLPDKAS .... :. : : .. ..:: . :. :.: . :.:...:: CCDS65 SIAMATDYDCWK-EHEEAVSVDRVLKTLKENANKAK---SLLLTTIPQIGSTEWSETLHN 220 230 240 250 260 CCDS65 LKNMAQFSVLLPRH 270 280 289 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:51:44 2016 done: Sun Nov 6 09:51:44 2016 Total Scan time: 2.360 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]