FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1874, 396 aa 1>>>pF1KE1874 396 - 396 aa - 396 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4303+/-0.000685; mu= 17.0038+/- 0.041 mean_var=70.9158+/-14.299, 0's: 0 Z-trim(110.6): 9 B-trim: 0 in 0/51 Lambda= 0.152301 statistics sampled from 11702 (11705) to 11702 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.36), width: 16 Scan time: 3.090 The best scores are: opt bits E(32554) CCDS8779.1 DHH gene_id:50846|Hs108|chr12 ( 396) 2703 602.6 2e-172 CCDS33380.1 IHH gene_id:3549|Hs108|chr2 ( 411) 1520 342.7 3.7e-94 CCDS5942.1 SHH gene_id:6469|Hs108|chr7 ( 462) 1206 273.7 2.4e-73 >>CCDS8779.1 DHH gene_id:50846|Hs108|chr12 (396 aa) initn: 2703 init1: 2703 opt: 2703 Z-score: 3209.0 bits: 602.6 E(32554): 2e-172 Smith-Waterman score: 2703; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396) 10 20 30 40 50 60 pF1KE1 MALLTNLLPLCCLALLALPAQSCGPGRGPVGRRRYARKQLVPLLYKQFVPGVPERTLGAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS87 MALLTNLLPLCCLALLALPAQSCGPGRGPVGRRRYARKQLVPLLYKQFVPGVPERTLGAS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS87 GPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWVYYESRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS87 VRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWVYYESRN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 HVHVSVKADNSLAVRAGGCFPGNATVRLWSGERKGLRELHRGDWVLAADASGRVVPTPVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS87 HVHVSVKADNSLAVRAGGCFPGNATVRLWSGERKGLRELHRGDWVLAADASGRVVPTPVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 LFLDRDLQRRASFVAVETEWPPRKLLLTPWHLVFAARGPAPAPGDFAPVFARRLRAGDSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS87 LFLDRDLQRRASFVAVETEWPPRKLLLTPWHLVFAARGPAPAPGDFAPVFARRLRAGDSV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LAPGGDALRPARVARVAREEAVGVFAPLTAHGTLLVNDVLASCYAVLESHQWAHRAFAPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS87 LAPGGDALRPARVARVAREEAVGVFAPLTAHGTLLVNDVLASCYAVLESHQWAHRAFAPL 310 320 330 340 350 360 370 380 390 pF1KE1 RLLHALGALLPGGAVQPTGMHWYSRLLYRLAEELLG :::::::::::::::::::::::::::::::::::: CCDS87 RLLHALGALLPGGAVQPTGMHWYSRLLYRLAEELLG 370 380 390 >>CCDS33380.1 IHH gene_id:3549|Hs108|chr2 (411 aa) initn: 1475 init1: 1410 opt: 1520 Z-score: 1804.0 bits: 342.7 E(32554): 3.7e-94 Smith-Waterman score: 1520; 59.9% identity (81.0% similar) in 389 aa overlap (10-395:14-396) 10 20 30 40 50 pF1KE1 MALLTNLLPLCCLALLALPAQ-SCGPGRGPVGRRRYARKQLVPLLYKQFVPGVPER : : ::..:: .::::: :: :: ..:::: :::: :.:::. CCDS33 MSPARLRPRLHFCLVLLLLLVVPAAWGCGPGR-VVGSRRRPPRKLVPLAYKQFSPNVPEK 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 TLGASGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLMTERCKERVNALAIAVM :::::: ::..::.::::..:.::::::::::::::.:::::::.:::.:.:.:::.:: CCDS33 TLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVM 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 NMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWVY :.::::.:::::::::::::...::::::::.:::::::::::::::::::::::::::: CCDS33 NQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVY 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 YESRNHVHVSVKADNSLAVRAGGCFPGNATVRLWSGERKGLRELHRGDWVLAADASGRVV :::. ::: :::...: :...:::::..: ::: :: : .: .. :: ::: .: . CCDS33 YESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPT 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 PTPVLLFLDRDLQRRASFVAVETEWPPRKLLLTPWHLVFAARGPAPAPGDFAPVFARRLR . ::.::::. .: .: ..::. :::.: ::: ::.:.: . . . : .:: ... CCDS33 FSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLLFTADNHTEPAARFRATFASHVQ 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE1 AGDSVLAPGGDALRPARVARVAREEAVGVFAPLTAHGTLLVNDVLASCYAVLESHQWAHR :. ::. : .:.::::: :. . :.:..:::: ::::.:.::.:::.:.. .:. :. CCDS33 PGQYVLVAGVPGLQPARVAAVSTHVALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQL 300 310 320 330 340 350 360 370 380 390 pF1KE1 AFAPLRLLHAL--GALLPGGAVQPTGMHWYSRLLYRLAEELLG :: ::::.:.: :. :: :.::: .:::::.. :: CCDS33 AFWPLRLFHSLAWGSWTPG-----EGVHWYPQLLYRLGRLLLEEGSFHPLGMSGAGS 360 370 380 390 400 410 >>CCDS5942.1 SHH gene_id:6469|Hs108|chr7 (462 aa) initn: 1421 init1: 1126 opt: 1206 Z-score: 1430.3 bits: 273.7 E(32554): 2.4e-73 Smith-Waterman score: 1456; 58.7% identity (78.2% similar) in 395 aa overlap (1-371:1-392) 10 20 30 40 50 pF1KE1 MALLTNLLPLCCLA-LLALPAQSCGPGRGPVGRRRYARKQLVPLLYKQFVPGVPERTLGA : ::. : : .. ::. . .:::::: :.::. .: :.:: ::::.:.: :.:::: CCDS59 MLLLARCLLLVLVSSLLVCSGLACGPGRG-FGKRRHPKK-LTPLAYKQFIPNVAEKTLGA 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 SGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWP :: ::...:.::::..:.::::::::::::::.:::::::.:::...:::::.:::.:: CCDS59 SGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 GVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWVYYESR ::.:::::::::::::...::::::::.:::::::::.:::.:::::::::::::::::. CCDS59 GVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESK 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 NHVHVSVKADNSLAVRAGGCFPGNATVRLWSGERKGLRELHRGDWVLAADASGRVVPTPV :.: ::::.::.:...::::::.:::.: .: : ...: :: ::::: .::.. . CCDS59 AHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDF 180 190 200 210 220 230 240 250 260 270 280 pF1KE1 LLFLDRDLQRRASFVAVETEWPPRKLLLTPWHLVFAA---------------RGPAPAPG : ::::: . : ..::. : ..:::: ::.:.: :: :. : CCDS59 LTFLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGP-PSGG 240 250 260 270 280 290 290 300 310 320 330 pF1KE1 DFAP--VFARRLRAGDSVLA----PGGDALRPARVARVA-REEAVGVFAPLTAHGTLLVN ..: .:: :.: :. : . : : :: : :. :::.:..:::::.::.:.: CCDS59 ALGPRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILIN 300 310 320 330 340 350 340 350 360 370 380 390 pF1KE1 DVLASCYAVLESHQWAHRAFAPLRLLHAL-GALLPGGAVQPTGMHWYSRLLYRLAEELLG ::::::::.: :.::::::::.:: ::: .:: : CCDS59 RVLASCYAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTA 360 370 380 390 400 410 CCDS59 PGAADAPGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS 420 430 440 450 460 396 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:52:56 2016 done: Sun Nov 6 09:52:56 2016 Total Scan time: 3.090 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]