FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2425, 329 aa 1>>>pF1KE2425 329 - 329 aa - 329 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.4396+/-0.000309; mu= 21.0644+/- 0.019 mean_var=63.6194+/-13.160, 0's: 0 Z-trim(117.0): 3 B-trim: 1668 in 1/50 Lambda= 0.160798 statistics sampled from 28597 (28600) to 28597 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.335), width: 16 Scan time: 6.940 The best scores are: opt bits E(85289) NP_005124 (OMIM: 605385) CAAX prenyl protease 2 is ( 329) 2269 534.6 1.1e-151 NP_001027450 (OMIM: 605385) CAAX prenyl protease 2 ( 225) 1562 370.5 1.9e-102 >>NP_005124 (OMIM: 605385) CAAX prenyl protease 2 isofor (329 aa) initn: 2269 init1: 2269 opt: 2269 Z-score: 2844.6 bits: 534.6 E(85289): 1.1e-151 Smith-Waterman score: 2269; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329) 10 20 30 40 50 60 pF1KE2 MAALGGDGLRLLSVSRPERPPESAALGGLGPGLCCWVSVFSCLSLACSYVGSLYVWKSEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MAALGGDGLRLLSVSRPERPPESAALGGLGPGLCCWVSVFSCLSLACSYVGSLYVWKSEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PRDHPAVIKRRFTSVLVVSSLSPLCVLLWRELTGIQPGTSLLTLMGFRLEGIFPAALLPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 PRDHPAVIKRRFTSVLVVSSLSPLCVLLWRELTGIQPGTSLLTLMGFRLEGIFPAALLPL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 LLTMILFLGPLMQLSMDCPCDLADGLKVVLAPRSWARCLTDMRWLRNQVIAPLTEELVFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LLTMILFLGPLMQLSMDCPCDLADGLKVVLAPRSWARCLTDMRWLRNQVIAPLTEELVFR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 ACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVGNIFLSAAFQFSYTAVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 ACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVGNIFLSAAFQFSYTAVF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 GAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQRRPLLAGYALGVGLFLLLLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQRRPLLAGYALGVGLFLLLLQ 250 260 270 280 290 300 310 320 pF1KE2 PLTDPKLYGSLPLCVLLERAGDSEAPLCS ::::::::::::::::::::::::::::: NP_005 PLTDPKLYGSLPLCVLLERAGDSEAPLCS 310 320 >>NP_001027450 (OMIM: 605385) CAAX prenyl protease 2 iso (225 aa) initn: 1562 init1: 1562 opt: 1562 Z-score: 1960.3 bits: 370.5 E(85289): 1.9e-102 Smith-Waterman score: 1562; 100.0% identity (100.0% similar) in 225 aa overlap (105-329:1-225) 80 90 100 110 120 130 pF1KE2 VLVVSSLSPLCVLLWRELTGIQPGTSLLTLMGFRLEGIFPAALLPLLLTMILFLGPLMQL :::::::::::::::::::::::::::::: NP_001 MGFRLEGIFPAALLPLLLTMILFLGPLMQL 10 20 30 140 150 160 170 180 190 pF1KE2 SMDCPCDLADGLKVVLAPRSWARCLTDMRWLRNQVIAPLTEELVFRACMLPMLAPCMGLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SMDCPCDLADGLKVVLAPRSWARCLTDMRWLRNQVIAPLTEELVFRACMLPMLAPCMGLG 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE2 PAVFTCPLFFGVAHFHHIIEQLRFRQSSVGNIFLSAAFQFSYTAVFGAYTAFLFIRTGHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PAVFTCPLFFGVAHFHHIIEQLRFRQSSVGNIFLSAAFQFSYTAVFGAYTAFLFIRTGHL 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE2 IGPVLCHSFCNYMGFPAVCAALEHPQRRPLLAGYALGVGLFLLLLQPLTDPKLYGSLPLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IGPVLCHSFCNYMGFPAVCAALEHPQRRPLLAGYALGVGLFLLLLQPLTDPKLYGSLPLC 160 170 180 190 200 210 320 pF1KE2 VLLERAGDSEAPLCS ::::::::::::::: NP_001 VLLERAGDSEAPLCS 220 329 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 19:53:08 2016 done: Mon Nov 7 19:53:09 2016 Total Scan time: 6.940 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]