FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9889, 1043 aa 1>>>pF1KB9889 1043 - 1043 aa - 1043 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4358+/-0.000483; mu= 23.8504+/- 0.030 mean_var=130.7423+/-27.208, 0's: 0 Z-trim(112.9): 163 B-trim: 1067 in 1/52 Lambda= 0.112167 statistics sampled from 21844 (22053) to 21844 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.259), width: 16 Scan time: 14.820 The best scores are: opt bits E(85289) XP_005253098 (OMIM: 179615,233650,601457,603554,60 (1043) 7063 1155.8 0 XP_011518552 (OMIM: 179615,233650,601457,603554,60 (1043) 7063 1155.8 0 NP_000439 (OMIM: 179615,233650,601457,603554,60988 (1043) 7053 1154.2 0 XP_011524349 (OMIM: 610432,616260) PREDICTED: E3 u ( 191) 199 44.1 0.00089 XP_011524348 (OMIM: 610432,616260) PREDICTED: E3 u ( 196) 199 44.1 0.00091 NP_057355 (OMIM: 616319) E3 ubiquitin-protein liga ( 245) 200 44.4 0.00093 NP_001178253 (OMIM: 616319) E3 ubiquitin-protein l ( 245) 200 44.4 0.00093 XP_011524347 (OMIM: 610432,616260) PREDICTED: E3 u ( 227) 199 44.2 0.00099 NP_060301 (OMIM: 610432,616260) E3 ubiquitin-prote ( 232) 199 44.2 0.001 XP_016864265 (OMIM: 609732) PREDICTED: E3 ubiquiti ( 728) 205 45.8 0.001 XP_005265842 (OMIM: 609732) PREDICTED: E3 ubiquiti ( 728) 205 45.8 0.001 NP_001119800 (OMIM: 609732) E3 ubiquitin-protein l ( 728) 205 45.8 0.001 >>XP_005253098 (OMIM: 179615,233650,601457,603554,609889 (1043 aa) initn: 7063 init1: 7063 opt: 7063 Z-score: 6183.7 bits: 1155.8 E(85289): 0 Smith-Waterman score: 7063; 100.0% identity (100.0% similar) in 1043 aa overlap (1-1043:1-1043) 10 20 30 40 50 60 pF1KB9 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB9 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB9 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB9 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB9 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC 850 860 870 880 890 900 910 920 930 940 950 960 pF1KB9 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KB9 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN 970 980 990 1000 1010 1020 1030 1040 pF1KB9 PQASLGDPLGIEDSLESQDSMEF ::::::::::::::::::::::: XP_005 PQASLGDPLGIEDSLESQDSMEF 1030 1040 >>XP_011518552 (OMIM: 179615,233650,601457,603554,609889 (1043 aa) initn: 7063 init1: 7063 opt: 7063 Z-score: 6183.7 bits: 1155.8 E(85289): 0 Smith-Waterman score: 7063; 100.0% identity (100.0% similar) in 1043 aa overlap (1-1043:1-1043) 10 20 30 40 50 60 pF1KB9 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB9 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB9 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB9 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB9 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC 850 860 870 880 890 900 910 920 930 940 950 960 pF1KB9 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KB9 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN 970 980 990 1000 1010 1020 1030 1040 pF1KB9 PQASLGDPLGIEDSLESQDSMEF ::::::::::::::::::::::: XP_011 PQASLGDPLGIEDSLESQDSMEF 1030 1040 >>NP_000439 (OMIM: 179615,233650,601457,603554,609889) V (1043 aa) initn: 7053 init1: 7053 opt: 7053 Z-score: 6175.0 bits: 1154.2 E(85289): 0 Smith-Waterman score: 7053; 99.9% identity (100.0% similar) in 1043 aa overlap (1-1043:1-1043) 10 20 30 40 50 60 pF1KB9 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 DQARQARQRKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB9 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB9 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB9 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB9 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC 850 860 870 880 890 900 910 920 930 940 950 960 pF1KB9 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KB9 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN 970 980 990 1000 1010 1020 1030 1040 pF1KB9 PQASLGDPLGIEDSLESQDSMEF ::::::::::::::::::::::: NP_000 PQASLGDPLGIEDSLESQDSMEF 1030 1040 >>XP_011524349 (OMIM: 610432,616260) PREDICTED: E3 ubiqu (191 aa) initn: 200 init1: 175 opt: 199 Z-score: 188.8 bits: 44.1 E(85289): 0.00089 Smith-Waterman score: 204; 34.5% identity (56.9% similar) in 116 aa overlap (284-399:28-132) 260 270 280 290 300 310 pF1KB9 QARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFC :: : :..: .: ..: .::.: : :::: XP_011 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFC 10 20 30 40 50 320 330 340 350 360 370 pF1KB9 RVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYN : :: :: :: :: .:.. :. . . ..: . .: ::. : : .. XP_011 RSCIATSLKNNKWTCPYCR-AYLPSE-GVPATDVAKRMKSEYKNC--AECDTLVCLSEMR 60 70 80 90 100 110 380 390 400 410 420 430 pF1KB9 HHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSV :: . .. .:.: : : :.: XP_011 AHIRTCQK------YIDKYG-PLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERR 120 130 140 150 160 >>XP_011524348 (OMIM: 610432,616260) PREDICTED: E3 ubiqu (196 aa) initn: 200 init1: 175 opt: 199 Z-score: 188.6 bits: 44.1 E(85289): 0.00091 Smith-Waterman score: 204; 34.5% identity (56.9% similar) in 116 aa overlap (284-399:28-132) 260 270 280 290 300 310 pF1KB9 QARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFC :: : :..: .: ..: .::.: : :::: XP_011 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFC 10 20 30 40 50 320 330 340 350 360 370 pF1KB9 RVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYN : :: :: :: :: .:.. :. . . ..: . .: ::. : : .. XP_011 RSCIATSLKNNKWTCPYCR-AYLPSE-GVPATDVAKRMKSEYKNC--AECDTLVCLSEMR 60 70 80 90 100 110 380 390 400 410 420 430 pF1KB9 HHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSV :: . .. .:.: : : :.: XP_011 AHIRTCQK------YIDKYG-PLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERR 120 130 140 150 160 >>NP_057355 (OMIM: 616319) E3 ubiquitin-protein ligase R (245 aa) initn: 178 init1: 125 opt: 200 Z-score: 188.4 bits: 44.4 E(85289): 0.00093 Smith-Waterman score: 200; 27.4% identity (63.2% similar) in 95 aa overlap (293-384:18-110) 270 280 290 300 310 320 pF1KB9 MKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETN-CKHVFCRVCILRCL : .:...: ::.:. :.::::: :.: . NP_057 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAM 10 20 30 40 330 340 350 360 370 pF1KB9 KVMGSYCPSCRYPCFPTDLESPVKSF--LSVLNSLMVKCPAKECNEEVSLEKYNHHISSH . :..:: :: . : ... ... .. .: . : ..... .. :: .: NP_057 RESGAHCPLCRGNVTRRERACPERALDLENIMRKFSGSC--RCCAKQIKFYRMRHHYKSC 50 60 70 80 90 100 380 390 400 410 420 430 pF1KB9 KESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSVCMTLFL :. .. NP_057 KKYQDEYGVSSIIPNFQISQDSVGNSNRSETSTSDNTETYQENTSSSGHPTFKCPLCQES 110 120 130 140 150 160 >>NP_001178253 (OMIM: 616319) E3 ubiquitin-protein ligas (245 aa) initn: 178 init1: 125 opt: 200 Z-score: 188.4 bits: 44.4 E(85289): 0.00093 Smith-Waterman score: 200; 27.4% identity (63.2% similar) in 95 aa overlap (293-384:18-110) 270 280 290 300 310 320 pF1KB9 MKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETN-CKHVFCRVCILRCL : .:...: ::.:. :.::::: :.: . NP_001 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAM 10 20 30 40 330 340 350 360 370 pF1KB9 KVMGSYCPSCRYPCFPTDLESPVKSF--LSVLNSLMVKCPAKECNEEVSLEKYNHHISSH . :..:: :: . : ... ... .. .: . : ..... .. :: .: NP_001 RESGAHCPLCRGNVTRRERACPERALDLENIMRKFSGSC--RCCAKQIKFYRMRHHYKSC 50 60 70 80 90 100 380 390 400 410 420 430 pF1KB9 KESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSVCMTLFL :. .. NP_001 KKYQDEYGVSSIIPNFQISQDSVGNSNRSETSTSDNTETYQENTSSSGHPTFKCPLCQES 110 120 130 140 150 160 >>XP_011524347 (OMIM: 610432,616260) PREDICTED: E3 ubiqu (227 aa) initn: 230 init1: 175 opt: 199 Z-score: 187.9 bits: 44.2 E(85289): 0.00099 Smith-Waterman score: 204; 34.5% identity (56.9% similar) in 116 aa overlap (284-399:28-132) 260 270 280 290 300 310 pF1KB9 QARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFC :: : :..: .: ..: .::.: : :::: XP_011 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFC 10 20 30 40 50 320 330 340 350 360 370 pF1KB9 RVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYN : :: :: :: :: .:.. :. . . ..: . .: ::. : : .. XP_011 RSCIATSLKNNKWTCPYCR-AYLPSE-GVPATDVAKRMKSEYKNC--AECDTLVCLSEMR 60 70 80 90 100 110 380 390 400 410 420 430 pF1KB9 HHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSV :: . .. .:.: : : :.: XP_011 AHIRTCQK------YIDKYG-PLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERR 120 130 140 150 160 >>NP_060301 (OMIM: 610432,616260) E3 ubiquitin-protein l (232 aa) initn: 230 init1: 175 opt: 199 Z-score: 187.8 bits: 44.2 E(85289): 0.001 Smith-Waterman score: 204; 34.5% identity (56.9% similar) in 116 aa overlap (284-399:28-132) 260 270 280 290 300 310 pF1KB9 QARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFC :: : :..: .: ..: .::.: : :::: NP_060 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFC 10 20 30 40 50 320 330 340 350 360 370 pF1KB9 RVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYN : :: :: :: :: .:.. :. . . ..: . .: ::. : : .. NP_060 RSCIATSLKNNKWTCPYCR-AYLPSE-GVPATDVAKRMKSEYKNC--AECDTLVCLSEMR 60 70 80 90 100 110 380 390 400 410 420 430 pF1KB9 HHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSV :: . .. .:.: : : :.: NP_060 AHIRTCQK------YIDKYG-PLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERR 120 130 140 150 160 >>XP_016864265 (OMIM: 609732) PREDICTED: E3 ubiquitin-pr (728 aa) initn: 201 init1: 119 opt: 205 Z-score: 187.6 bits: 45.8 E(85289): 0.001 Smith-Waterman score: 205; 27.9% identity (56.6% similar) in 122 aa overlap (258-378:6-126) 230 240 250 260 270 280 pF1KB9 PNLQLSKKLKTVLDQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHF :..: : :.. : . ..::. XP_016 MNQPESANDPEPLCAVCGQAHSLEENHFYSYPEEV 10 20 30 290 300 310 320 330 340 pF1KB9 VKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSF .. :.:: . : ::..: : :..: .:. : : ..:: : : .. XP_016 DDDLICHICLQALLDPLDTPCGHTYCTLCLTNFL-VEKDFCPMDRKPLVLQHCKKSSILV 40 50 60 70 80 90 350 360 370 380 390 400 pF1KB9 LSVLNSLMVKCPAKE-CNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRA ..::.:.: :: .: :.. .. .::... XP_016 NKLLNKLLVTCPFREHCTQVLQRCDLEHHFQTSCKGASHYGLTKDRKRRSQDGCPDGCAS 100 110 120 130 140 150 410 420 430 440 450 460 pF1KB9 QKHRLRELKLQVKAFADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQ XP_016 LTATAPSPEVSAAATISLMTDEPGLDNPAYVSSAEDGQPAISPVDSGRSNRTRARPFERS 160 170 180 190 200 210 1043 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:54:21 2016 done: Sun Nov 6 09:54:23 2016 Total Scan time: 14.820 Total Display time: 0.210 Function used was FASTA [36.3.4 Apr, 2011]