FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9889, 1043 aa 1>>>pF1KB9889 1043 - 1043 aa - 1043 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8978+/-0.00116; mu= 15.3495+/- 0.070 mean_var=137.9294+/-28.824, 0's: 0 Z-trim(105.9): 99 B-trim: 0 in 0/52 Lambda= 0.109206 statistics sampled from 8597 (8695) to 8597 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.267), width: 16 Scan time: 3.750 The best scores are: opt bits E(32554) CCDS7902.1 RAG1 gene_id:5896|Hs108|chr11 (1043) 7063 1125.6 0 >>CCDS7902.1 RAG1 gene_id:5896|Hs108|chr11 (1043 aa) initn: 7063 init1: 7063 opt: 7063 Z-score: 6020.4 bits: 1125.6 E(32554): 0 Smith-Waterman score: 7063; 100.0% identity (100.0% similar) in 1043 aa overlap (1-1043:1-1043) 10 20 30 40 50 60 pF1KB9 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 SIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRKSLQPNLQLSKKLKTVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 DQARQARQHKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 ADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 KECNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB9 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB9 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB9 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB9 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC 850 860 870 880 890 900 910 920 930 940 950 960 pF1KB9 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KB9 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN 970 980 990 1000 1010 1020 1030 1040 pF1KB9 PQASLGDPLGIEDSLESQDSMEF ::::::::::::::::::::::: CCDS79 PQASLGDPLGIEDSLESQDSMEF 1030 1040 1043 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:54:20 2016 done: Sun Nov 6 09:54:21 2016 Total Scan time: 3.750 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]