FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3872, 185 aa
  1>>>pF1KE3872     185 - 185 aa - 185 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3372+/-0.000596; mu= 9.9777+/- 0.036
 mean_var=92.7527+/-18.125, 0's: 0 Z-trim(114.3): 3  B-trim: 0 in 0/53
 Lambda= 0.133171
 statistics sampled from 15029 (15031) to 15029 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.45), width:  16
 Scan time:  1.010

The best scores are:                                      opt bits E(33420)
CCDS7801.1 ADM gene_id:133|Hs109|chr11             ( 185) 1247 248.4   2e-66


>>CCDS7801.1 ADM gene_id:133|Hs109|chr11                  (185 aa)
 initn: 1247 init1: 1247 opt: 1247  Z-score: 1306.3  bits: 248.4 E(33420): 2e-66
Smith-Waterman score: 1247; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KE3 MKLVSVALMYLGSLAFLGADTARLDVASEFRKKWNKWALSRGKRELRMSSSYPTGLADVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MKLVSVALMYLGSLAFLGADTARLDVASEFRKKWNKWALSRGKRELRMSSSYPTGLADVK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 AGPAQTLIRPQDMKGASRSPEDSSPDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AGPAQTLIRPQDMKGASRSPEDSSPDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AHQIYQFTDKDKDNVAPRSKISPQGYGRRRRRSLPEAGPGRTLVSSKPQAHGAPAPPSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AHQIYQFTDKDKDNVAPRSKISPQGYGRRRRRSLPEAGPGRTLVSSKPQAHGAPAPPSGS
              130       140       150       160       170       180

            
pF1KE3 APHFL
       :::::
CCDS78 APHFL
            




185 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Aug  4 20:33:37 2021 done: Wed Aug  4 20:33:37 2021
 Total Scan time:  1.010 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]