FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4318, 324 aa 1>>>pF1KE4318 324 - 324 aa - 324 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4902+/-0.000729; mu= 11.1287+/- 0.044 mean_var=92.7145+/-18.457, 0's: 0 Z-trim(110.7): 8 B-trim: 0 in 0/53 Lambda= 0.133199 statistics sampled from 11829 (11832) to 11829 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.363), width: 16 Scan time: 2.970 The best scores are: opt bits E(32554) CCDS7476.1 HPS1 gene_id:3257|Hs108|chr10 ( 324) 2129 418.7 3e-117 CCDS7475.1 HPS1 gene_id:3257|Hs108|chr10 ( 700) 2058 405.3 7.5e-113 >>CCDS7476.1 HPS1 gene_id:3257|Hs108|chr10 (324 aa) initn: 2129 init1: 2129 opt: 2129 Z-score: 2218.4 bits: 418.7 E(32554): 3e-117 Smith-Waterman score: 2129; 99.7% identity (99.7% similar) in 324 aa overlap (1-324:1-324) 10 20 30 40 50 60 pF1KE4 MKGVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY 250 260 270 280 290 300 310 320 pF1KE4 FTPAPSPGDQSSGEDRRKAGGNNS :::::::::::::::::::::::: CCDS74 FTPAPSPGDQSSGEDRRKAGGNNS 310 320 >>CCDS7475.1 HPS1 gene_id:3257|Hs108|chr10 (700 aa) initn: 2058 init1: 2058 opt: 2058 Z-score: 2139.5 bits: 405.3 E(32554): 7.5e-113 Smith-Waterman score: 2058; 97.8% identity (97.8% similar) in 321 aa overlap (1-321:1-321) 10 20 30 40 50 60 pF1KE4 MKGVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY 250 260 270 280 290 300 310 320 pF1KE4 FTPAPSPGDQSSGEDRRKAGGNNS ::::::::::::: :: CCDS74 FTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKES 310 320 330 340 350 360 324 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:12:25 2016 done: Sat Nov 5 23:12:25 2016 Total Scan time: 2.970 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]