FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9448, 478 aa 1>>>pF1KE9448 478 - 478 aa - 478 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6876+/-0.000357; mu= 12.6542+/- 0.023 mean_var=136.7593+/-29.209, 0's: 0 Z-trim(118.9): 657 B-trim: 3078 in 2/51 Lambda= 0.109672 statistics sampled from 31488 (32291) to 31488 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.379), width: 16 Scan time: 8.250 The best scores are: opt bits E(85289) NP_150598 (OMIM: 606665) melanopsin isoform 1 [Hom ( 478) 3243 524.6 2.3e-148 XP_016872445 (OMIM: 606665) PREDICTED: melanopsin ( 528) 3167 512.6 1e-144 NP_001025186 (OMIM: 606665) melanopsin isoform 2 [ ( 489) 2599 422.7 1.1e-117 XP_016872446 (OMIM: 606665) PREDICTED: melanopsin ( 405) 2568 417.8 2.9e-116 XP_016872444 (OMIM: 606665) PREDICTED: melanopsin ( 539) 2523 410.7 4.9e-114 NP_859528 (OMIM: 609042) opsin-5 [Homo sapiens] ( 354) 547 97.9 4.8e-20 XP_016865905 (OMIM: 609042) PREDICTED: opsin-5 iso ( 408) 547 98.0 5.3e-20 XP_016865900 (OMIM: 609042) PREDICTED: opsin-5 iso ( 298) 514 92.7 1.6e-18 NP_006574 (OMIM: 605224) visual pigment-like recep ( 337) 452 82.9 1.5e-15 NP_000530 (OMIM: 136880,180380,610445,613731) rhod ( 348) 411 76.4 1.4e-13 NP_001699 (OMIM: 190900,613522) short-wave-sensiti ( 348) 395 73.9 8.2e-13 XP_016856350 (OMIM: 612250) PREDICTED: G-protein c ( 529) 396 74.2 9.9e-13 XP_016856351 (OMIM: 612250) PREDICTED: G-protein c ( 529) 396 74.2 9.9e-13 XP_005245114 (OMIM: 612250) PREDICTED: G-protein c ( 529) 396 74.2 9.9e-13 NP_001254539 (OMIM: 612250) G-protein coupled rece ( 529) 396 74.2 9.9e-13 XP_005245113 (OMIM: 612250) PREDICTED: G-protein c ( 529) 396 74.2 9.9e-13 XP_011507678 (OMIM: 612250) PREDICTED: G-protein c ( 529) 396 74.2 9.9e-13 XP_011507677 (OMIM: 612250) PREDICTED: G-protein c ( 529) 396 74.2 9.9e-13 XP_011507679 (OMIM: 612250) PREDICTED: G-protein c ( 529) 396 74.2 9.9e-13 XP_011507680 (OMIM: 612250) PREDICTED: G-protein c ( 529) 396 74.2 9.9e-13 NP_722561 (OMIM: 612250) G-protein coupled recepto ( 529) 396 74.2 9.9e-13 XP_016856349 (OMIM: 612250) PREDICTED: G-protein c ( 529) 396 74.2 9.9e-13 NP_001254540 (OMIM: 612250) G-protein coupled rece ( 546) 396 74.2 1e-12 XP_005245112 (OMIM: 612250) PREDICTED: G-protein c ( 549) 396 74.2 1e-12 XP_016856348 (OMIM: 612250) PREDICTED: G-protein c ( 549) 396 74.2 1e-12 NP_001254538 (OMIM: 612250) G-protein coupled rece ( 549) 396 74.2 1e-12 XP_011507675 (OMIM: 612250) PREDICTED: G-protein c ( 552) 396 74.2 1e-12 XP_011507672 (OMIM: 612250) PREDICTED: G-protein c ( 552) 396 74.2 1e-12 XP_016856347 (OMIM: 612250) PREDICTED: G-protein c ( 552) 396 74.2 1e-12 XP_006711314 (OMIM: 612250) PREDICTED: G-protein c ( 552) 396 74.2 1e-12 XP_011507673 (OMIM: 612250) PREDICTED: G-protein c ( 552) 396 74.2 1e-12 XP_011507674 (OMIM: 612250) PREDICTED: G-protein c ( 552) 396 74.2 1e-12 XP_006711316 (OMIM: 612250) PREDICTED: G-protein c ( 609) 396 74.3 1.1e-12 NP_055137 (OMIM: 606695) opsin-3 [Homo sapiens] ( 402) 389 73.0 1.8e-12 NP_778237 (OMIM: 608923) trace amine-associated re ( 345) 387 72.6 1.9e-12 NP_000504 (OMIM: 300821,303700,303800) medium-wave ( 364) 382 71.8 3.5e-12 NP_005305 (OMIM: 305670) gastrin-releasing peptide ( 384) 382 71.9 3.6e-12 NP_115940 (OMIM: 176400,604161,614837) kiSS-1 rece ( 398) 377 71.1 6.5e-12 NP_062874 (OMIM: 182137) 5-hydroxytryptamine recep ( 432) 377 71.1 6.9e-12 NP_000863 (OMIM: 182137) 5-hydroxytryptamine recep ( 445) 377 71.1 7e-12 NP_062873 (OMIM: 182137) 5-hydroxytryptamine recep ( 479) 377 71.2 7.4e-12 NP_444508 (OMIM: 606927) trace amine-associated re ( 342) 374 70.6 8.1e-12 NP_064445 (OMIM: 300822,303700,303900) long-wave-s ( 364) 373 70.4 9.4e-12 NP_000668 (OMIM: 600445) adenosine receptor A3 iso ( 318) 369 69.7 1.3e-11 NP_778227 (OMIM: 608282) trace amine-associated re ( 348) 366 69.3 2e-11 NP_937822 (OMIM: 606925) pyroglutamylated RFamide ( 431) 364 69.1 2.9e-11 XP_005265876 (OMIM: 104220) PREDICTED: alpha-1B ad ( 328) 361 68.5 3.3e-11 XP_006714884 (OMIM: 104220) PREDICTED: alpha-1B ad ( 331) 361 68.5 3.3e-11 XP_005265875 (OMIM: 104220) PREDICTED: alpha-1B ad ( 366) 361 68.5 3.5e-11 XP_011532740 (OMIM: 104220) PREDICTED: alpha-1B ad ( 389) 361 68.5 3.7e-11 >>NP_150598 (OMIM: 606665) melanopsin isoform 1 [Homo sa (478 aa) initn: 3243 init1: 3243 opt: 3243 Z-score: 2784.6 bits: 524.6 E(85289): 2.3e-148 Smith-Waterman score: 3243; 99.8% identity (99.8% similar) in 478 aa overlap (1-478:1-478) 10 20 30 40 50 60 pF1KE9 MNPPSGPRVLPSPTQEPSCMATPAPPSWWDSSQSSISSLGRLPSISPTAPGTWAAAWVPL ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 MNPPSGPRVPPSPTQEPSCMATPAPPSWWDSSQSSISSLGRLPSISPTAPGTWAAAWVPL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 PTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRSRSLRTPANMFIINLAVSDFLMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 PTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRSRSLRTPANMFIINLAVSDFLMS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 FTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 FTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATFG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 VASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPAVRAYTMLLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 VASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPAVRAYTMLLC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 CFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLWQRQRLQSECKMAKIMLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 CFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLWQRQRLQSECKMAKIMLL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 VILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAKASAIHNPIIYAITHPKYRVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 VILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAKASAIHNPIIYAITHPKYRVA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE9 IAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSNLSWISIRRRQESLGSESEVGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 IAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSNLSWISIRRRQESLGSESEVGW 370 380 390 400 410 420 430 440 450 460 470 pF1KE9 THMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAETPGKTKGLIPSQDPRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 THMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAETPGKTKGLIPSQDPRM 430 440 450 460 470 >>XP_016872445 (OMIM: 606665) PREDICTED: melanopsin isof (528 aa) initn: 3191 init1: 3167 opt: 3167 Z-score: 2719.0 bits: 512.6 E(85289): 1e-144 Smith-Waterman score: 3167; 99.4% identity (99.6% similar) in 469 aa overlap (1-469:1-469) 10 20 30 40 50 60 pF1KE9 MNPPSGPRVLPSPTQEPSCMATPAPPSWWDSSQSSISSLGRLPSISPTAPGTWAAAWVPL ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MNPPSGPRVPPSPTQEPSCMATPAPPSWWDSSQSSISSLGRLPSISPTAPGTWAAAWVPL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 PTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRSRSLRTPANMFIINLAVSDFLMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRSRSLRTPANMFIINLAVSDFLMS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 FTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATFG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 VASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPAVRAYTMLLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPAVRAYTMLLC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 CFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLWQRQRLQSECKMAKIMLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLWQRQRLQSECKMAKIMLL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 VILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAKASAIHNPIIYAITHPKYRVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAKASAIHNPIIYAITHPKYRVA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE9 IAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSNLSWISIRRRQESLGSESEVGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSNLSWISIRRRQESLGSESEVGW 370 380 390 400 410 420 430 440 450 460 470 pF1KE9 THMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAETPGKTKGLIPSQDPRM ::::::::::::::::::::::::::::::::::::::::::::::. : XP_016 THMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAETPGKVTGPGTCQSTKGWG 430 440 450 460 470 480 XP_016 LGASSPGRGQERETCSHGQGRYPPGITCSQHLPAFPCLPGVLCDSEML 490 500 510 520 >>NP_001025186 (OMIM: 606665) melanopsin isoform 2 [Homo (489 aa) initn: 2567 init1: 2567 opt: 2599 Z-score: 2233.8 bits: 422.7 E(85289): 1.1e-117 Smith-Waterman score: 3211; 97.5% identity (97.5% similar) in 489 aa overlap (1-478:1-489) 10 20 30 40 50 60 pF1KE9 MNPPSGPRVLPSPTQEPSCMATPAPPSWWDSSQSSISSLGRLPSISPTAPGTWAAAWVPL ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MNPPSGPRVPPSPTQEPSCMATPAPPSWWDSSQSSISSLGRLPSISPTAPGTWAAAWVPL 10 20 30 40 50 60 70 80 90 100 pF1KE9 PTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR-----------SRSLRTPANMFI ::::::::::::::::::::::::::::::::::::: :::::::::::: NP_001 PTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRAVLRGVTVMMQSRSLRTPANMFI 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE9 INLAVSDFLMSFTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 INLAVSDFLMSFTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRY 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE9 LVITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LVITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFT 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE9 PAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLWQRQRLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLWQRQRLQ 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE9 SECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAKASAIHNPII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAKASAIHNPII 310 320 330 340 350 360 350 360 370 380 390 400 pF1KE9 YAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSNLSWISIRRRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSNLSWISIRRRQ 370 380 390 400 410 420 410 420 430 440 450 460 pF1KE9 ESLGSESEVGWTHMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAETPGKTKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ESLGSESEVGWTHMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAETPGKTKG 430 440 450 460 470 480 470 pF1KE9 LIPSQDPRM ::::::::: NP_001 LIPSQDPRM >>XP_016872446 (OMIM: 606665) PREDICTED: melanopsin isof (405 aa) initn: 2567 init1: 2567 opt: 2568 Z-score: 2208.3 bits: 417.8 E(85289): 2.9e-116 Smith-Waterman score: 2622; 97.3% identity (97.3% similar) in 405 aa overlap (85-478:1-405) 60 70 80 90 100 pF1KE9 AAWVPLPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR-----------SRSLRT ::::::::::::: :::::: XP_016 MLGNLTVIYTFCRAVLRGVTVMMQSRSLRT 10 20 30 110 120 130 140 150 160 pF1KE9 PANMFIINLAVSDFLMSFTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PANMFIINLAVSDFLMSFTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLTA 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE9 IALDRYLVITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IALDRYLVITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSW 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE9 DYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLW 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE9 QRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAKASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAKASA 220 230 240 250 260 270 350 360 370 380 390 400 pF1KE9 IHNPIIYAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSNLSWI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IHNPIIYAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSNLSWI 280 290 300 310 320 330 410 420 430 440 450 460 pF1KE9 SIRRRQESLGSESEVGWTHMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SIRRRQESLGSESEVGWTHMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAET 340 350 360 370 380 390 470 pF1KE9 PGKTKGLIPSQDPRM ::::::::::::::: XP_016 PGKTKGLIPSQDPRM 400 >>XP_016872444 (OMIM: 606665) PREDICTED: melanopsin isof (539 aa) initn: 3178 init1: 2490 opt: 2523 Z-score: 2168.2 bits: 410.7 E(85289): 4.9e-114 Smith-Waterman score: 3135; 97.1% identity (97.3% similar) in 480 aa overlap (1-469:1-480) 10 20 30 40 50 60 pF1KE9 MNPPSGPRVLPSPTQEPSCMATPAPPSWWDSSQSSISSLGRLPSISPTAPGTWAAAWVPL ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MNPPSGPRVPPSPTQEPSCMATPAPPSWWDSSQSSISSLGRLPSISPTAPGTWAAAWVPL 10 20 30 40 50 60 70 80 90 100 pF1KE9 PTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCR-----------SRSLRTPANMFI ::::::::::::::::::::::::::::::::::::: :::::::::::: XP_016 PTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRAVLRGVTVMMQSRSLRTPANMFI 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE9 INLAVSDFLMSFTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 INLAVSDFLMSFTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRY 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE9 LVITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LVITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFT 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE9 PAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLWQRQRLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLWQRQRLQ 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE9 SECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAKASAIHNPII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAKASAIHNPII 310 320 330 340 350 360 350 360 370 380 390 400 pF1KE9 YAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSNLSWISIRRRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSNLSWISIRRRQ 370 380 390 400 410 420 410 420 430 440 450 460 pF1KE9 ESLGSESEVGWTHMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAETPGKTKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::. : XP_016 ESLGSESEVGWTHMEAAAVWGAAQQANGRSLYGQGLEDLEAKAPPRPQGHEAETPGKVTG 430 440 450 460 470 480 470 pF1KE9 LIPSQDPRM XP_016 PGTCQSTKGWGLGASSPGRGQERETCSHGQGRYPPGITCSQHLPAFPCLPGVLCDSEML 490 500 510 520 530 >>NP_859528 (OMIM: 609042) opsin-5 [Homo sapiens] (354 aa) initn: 418 init1: 229 opt: 547 Z-score: 480.9 bits: 97.9 E(85289): 4.8e-20 Smith-Waterman score: 547; 30.8% identity (62.0% similar) in 292 aa overlap (69-357:32-313) 40 50 60 70 80 90 pF1KE9 LGRLPSISPTAPGTWAAAWVPLPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRS : . : . ..:. . .:: :.: : NP_859 ALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRR 10 20 30 40 50 60 100 110 120 130 140 150 pF1KE9 RSLRTPANMFIINLAVSDFLMSFTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSM .. ::... ::::: :. .: . : . : . ..:.:: ::..:.. : .:: .:. NP_859 KKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSL 70 80 90 100 110 120 160 170 180 190 200 210 pF1KE9 ITLTAIALDRYLVITRPLATFGVASKRRAAFVLLG-VWLYALAWSLPPFFGWSAYVPEGL ::.::..::::: : ..:: ::. :.. :. .: :: :. :. : . :::: . NP_859 ITMTAVSLDRYLKICY--LSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPF 130 140 150 160 170 220 230 240 250 260 270 pF1KE9 LTSCSWDYMSFTPAV--RAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGAC :::. :. .: ... . . : ..:: .:.. :. :. .. ... . : . NP_859 GTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSR 180 190 200 210 220 230 280 290 300 310 320 330 pF1KE9 KGNGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVP ... : : :..:. .:. :...: ::..:.. . : . .: :: NP_859 IHSSHVL--------EMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVP 240 250 260 270 280 290 340 350 360 370 380 390 pF1KE9 AVIAKASAIHNPIIYAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTS ...::..:..::::: . :. NP_859 TLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHE 300 310 320 330 340 350 >>XP_016865905 (OMIM: 609042) PREDICTED: opsin-5 isoform (408 aa) initn: 418 init1: 229 opt: 547 Z-score: 480.1 bits: 98.0 E(85289): 5.3e-20 Smith-Waterman score: 547; 30.8% identity (62.0% similar) in 292 aa overlap (69-357:32-313) 40 50 60 70 80 90 pF1KE9 LGRLPSISPTAPGTWAAAWVPLPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRS : . : . ..:. . .:: :.: : XP_016 ALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRR 10 20 30 40 50 60 100 110 120 130 140 150 pF1KE9 RSLRTPANMFIINLAVSDFLMSFTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSM .. ::... ::::: :. .: . : . : . ..:.:: ::..:.. : .:: .:. XP_016 KKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSL 70 80 90 100 110 120 160 170 180 190 200 210 pF1KE9 ITLTAIALDRYLVITRPLATFGVASKRRAAFVLLG-VWLYALAWSLPPFFGWSAYVPEGL ::.::..::::: : ..:: ::. :.. :. .: :: :. :. : . :::: . XP_016 ITMTAVSLDRYLKICY--LSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPF 130 140 150 160 170 220 230 240 250 260 270 pF1KE9 LTSCSWDYMSFTPAV--RAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGAC :::. :. .: ... . . : ..:: .:.. :. :. .. ... . : . XP_016 GTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSR 180 190 200 210 220 230 280 290 300 310 320 330 pF1KE9 KGNGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVP ... : : :..:. .:. :...: ::..:.. . : . .: :: XP_016 IHSSHVL--------EMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVP 240 250 260 270 280 290 340 350 360 370 380 390 pF1KE9 AVIAKASAIHNPIIYAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTS ...::..:..::::: . :. XP_016 TLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHE 300 310 320 330 340 350 >>XP_016865900 (OMIM: 609042) PREDICTED: opsin-5 isoform (298 aa) initn: 397 init1: 208 opt: 514 Z-score: 453.7 bits: 92.7 E(85289): 1.6e-18 Smith-Waterman score: 514; 32.2% identity (64.0% similar) in 264 aa overlap (97-357:5-257) 70 80 90 100 110 120 pF1KE9 DHAHYTLGTVILLVGLTGMLGNLTVIYTFCRSRSLRTPANMFIINLAVSDFLMSFTQAPV :...:: ::... ::::: :. .: . : XP_016 MSSRRKKKLR-PAEIMTINLAVCDLGISVVGKPF 10 20 30 130 140 150 160 170 180 pF1KE9 FFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATFGVASKRR . : . ..:.:: ::..:.. : .:: .:.::.::..::::: : ..:: ::. XP_016 TIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKIC--YLSYGVWLKRK 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE9 AAFVLLG-VWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPAV--RAYTMLLCCFV :.. :. .: :: :. :. : . :::: . :::. :. .: ... . . : XP_016 HAYICLAAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFC 100 110 120 130 140 150 250 260 270 280 290 300 pF1KE9 FFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNGESLWQRQRLQSECKMAKIMLLVIL ..:: .:.. :. :. .. ... . : . ... : : :..:. .:. XP_016 LLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVL--------EMKLTKVAMLICA 160 170 180 190 200 310 320 330 340 350 360 pF1KE9 LFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAKASAIHNPIIYAITHPKYRVAIAQ :...: ::..:.. . : . .: ::...::..:..::::: . :. XP_016 GFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTG 210 220 230 240 250 260 370 380 390 400 410 420 pF1KE9 HLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSNLSWISIRRRQESLGSESEVGWTHM XP_016 GLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE 270 280 290 >>NP_006574 (OMIM: 605224) visual pigment-like receptor (337 aa) initn: 498 init1: 225 opt: 452 Z-score: 400.0 bits: 82.9 E(85289): 1.5e-15 Smith-Waterman score: 588; 30.9% identity (66.1% similar) in 298 aa overlap (70-367:25-311) 40 50 60 70 80 90 pF1KE9 GRLPSISPTAPGTWAAAWVPLPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRSR : ..: ....:. ....:. :. : . . NP_006 MLRNNLGNSSDSKNEDGSVFSQTEHNIVATYLIMAGMISIISNIIVLGIFIKYK 10 20 30 40 50 100 110 120 130 140 150 pF1KE9 SLRTPANMFIINLAVSDFLMSFTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMI ::::.: .::::::.:. .: :. .:.:: .: :: .::. :: . .::..:. NP_006 ELRTPTNAIIINLAVTDIGVSSIGYPMSAASDLYGSWKFGYAGCQVYAGLNIFFGMASIG 60 70 80 90 100 110 160 170 180 190 200 210 pF1KE9 TLTAIALDRYLVITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGLLT ::..:.::::.: : . .... ...: :.:. .: :.: :..::..:.:. . NP_006 LLTVVAVDRYLTICLPDVGRRMTTNTYIGLIL-GAWINGLFWALMPIIGWASYAPDPTGA 120 130 140 150 160 170 220 230 240 250 260 270 pF1KE9 SCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKGNG .:. .. . . .::: . . :..:: ...::: . .:.. .: . : . NP_006 TCTINWRKNDRSFVSYTMTVIAINFIVPLTVMFYCYYHVTLSIKH-----HTTSDCTESL 180 190 200 210 220 280 290 300 310 320 330 pF1KE9 ESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIA . :. : ..:. ...: .:...:.::: : : : : . . : :. . ..: NP_006 NRDWSDQ-----IDVTKMSVIMICMFLVAWSPYSIVCLWASFGDPKKIPPPMAIIAPLFA 230 240 250 260 270 280 340 350 360 370 380 390 pF1KE9 KASAIHNPIIYAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHTSN :.:...:: ::.... :.: :. . : NP_006 KSSTFYNPCIYVVANKKFRRAMLAMFKCQTHQTMPVTSILPMDVSQNPLASGRI 290 300 310 320 330 >>NP_000530 (OMIM: 136880,180380,610445,613731) rhodopsi (348 aa) initn: 518 init1: 208 opt: 411 Z-score: 364.7 bits: 76.4 E(85289): 1.4e-13 Smith-Waterman score: 551; 28.7% identity (67.0% similar) in 300 aa overlap (73-367:40-323) 50 60 70 80 90 100 pF1KE9 PSISPTAPGTWAAAWVPLPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRSRSLR :.. ..:. . :. :. ..:. . ..:: NP_000 YVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLR 10 20 30 40 50 60 110 120 130 140 150 160 pF1KE9 TPANMFIINLAVSDFLMSFTQAPVFFTSSLYKQWLFGETGCEFYAFCGALFGISSMITLT :: :....::::.:..: . . .::. ..:: :::.. .: ..: : .. .:. NP_000 TPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLV 70 80 90 100 110 120 170 180 190 200 210 pF1KE9 AIALDRYLVITRPLATFGVASKRRAAFVLLGV---WLYALAWSLPPFFGWSAYVPEGLLT ..:..::.:. .:...: . .. ...:: :..::: . ::. ::: :.:::: NP_000 VLAIERYVVVCKPMSNFRFGENH----AIMGVAFTWVMALACAAPPLAGWSRYIPEGLQC 130 140 150 160 170 180 220 230 240 250 260 270 pF1KE9 SCSWDYMSFTPAVRAYTMLLCCFV--FFLPLLIIIYCYIFIFRAIRETGRALQTFGACKG ::. ::... : : .... :: : .:..::..:: . ...:.. : .. . NP_000 SCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQ- 190 200 210 220 230 240 280 290 300 310 320 330 pF1KE9 NGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAV ..: ........... :.. :.::..::. :. . . : . ..:: NP_000 -----------KAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAF 250 260 270 280 290 340 350 360 370 380 390 pF1KE9 IAKASAIHNPIIYAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHT .::..::.::.:: . . ..: . . : NP_000 FAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 300 310 320 330 340 478 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:45:18 2016 done: Sun Nov 6 06:45:20 2016 Total Scan time: 8.250 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]