FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4360, 379 aa 1>>>pF1KE4360 379 - 379 aa - 379 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6903+/-0.000723; mu= 16.0245+/- 0.044 mean_var=84.9817+/-16.900, 0's: 0 Z-trim(111.2): 23 B-trim: 0 in 0/50 Lambda= 0.139127 statistics sampled from 12171 (12178) to 12171 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.374), width: 16 Scan time: 2.800 The best scores are: opt bits E(32554) CCDS6565.1 GALT gene_id:2592|Hs108|chr9 ( 379) 2663 543.9 8.7e-155 CCDS59122.1 GALT gene_id:2592|Hs108|chr9 ( 270) 1763 363.1 1.6e-100 >>CCDS6565.1 GALT gene_id:2592|Hs108|chr9 (379 aa) initn: 2663 init1: 2663 opt: 2663 Z-score: 2892.4 bits: 543.9 E(32554): 8.7e-155 Smith-Waterman score: 2663; 99.7% identity (100.0% similar) in 379 aa overlap (1-379:1-379) 10 20 30 40 50 60 pF1KE4 MSRSGTDPQQRQQASEADAAAATFRANDHQHIRYNPLQDEWVLVSAHRMKRPWQGQVEPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MSRSGTDPQQRQQASEADAAAATFRANDHQHIRYNPLQDEWVLVSAHRMKRPWQGQVEPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 LLKTVPRHDPLNPLCPGAIRANGEVNPQYDSTFLFDNDFPALQPDAPSPGPSDHPLFQAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 LLKTVPRHDPLNPLCPGAIRANGEVNPQYDSTFLFDNDFPALQPDAPSPGPSDHPLFQAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SARGVCKVMCFHPWSDVTLPLMSVPEIRAVVDAWASVTEELGAQYPWVQIFENKGAMMGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 SARGVCKVMCFHPWSDVTLPLMSVPEIRAVVDAWASVTEELGAQYPWVQIFENKGAMMGC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 SNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEPLLMEYSRQELLRKERLVLTSEHWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 SNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEPLLMEYSRQELLRKERLVLTSEHWL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 VLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLASIMKKLLTKYDNLFETSFPYSMGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 VLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLASIMKKLLTKYDNLFETSFPYSMGW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 HGAPTGSEAGANWDHWQLHAHYYPPLLRSATVRKFMVGYEMLAQAQRDLTPEQAAERLRA :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: CCDS65 HGAPTGSEAGANWNHWQLHAHYYPPLLRSATVRKFMVGYEMLAQAQRDLTPEQAAERLRA 310 320 330 340 350 360 370 pF1KE4 LPEVHYHLGQKDRETATIA ::::::::::::::::::: CCDS65 LPEVHYHLGQKDRETATIA 370 >>CCDS59122.1 GALT gene_id:2592|Hs108|chr9 (270 aa) initn: 1763 init1: 1763 opt: 1763 Z-score: 1918.2 bits: 363.1 E(32554): 1.6e-100 Smith-Waterman score: 1763; 99.6% identity (100.0% similar) in 253 aa overlap (127-379:18-270) 100 110 120 130 140 150 pF1KE4 NDFPALQPDAPSPGPSDHPLFQAKSARGVCKVMCFHPWSDVTLPLMSVPEIRAVVDAWAS :::::::::::::::::::::::::::::: CCDS59 MTLSTLCVLGPSEPTESKVMCFHPWSDVTLPLMSVPEIRAVVDAWAS 10 20 30 40 160 170 180 190 200 210 pF1KE4 VTEELGAQYPWVQIFENKGAMMGCSNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 VTEELGAQYPWVQIFENKGAMMGCSNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEP 50 60 70 80 90 100 220 230 240 250 260 270 pF1KE4 LLMEYSRQELLRKERLVLTSEHWLVLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 LLMEYSRQELLRKERLVLTSEHWLVLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLA 110 120 130 140 150 160 280 290 300 310 320 330 pF1KE4 SIMKKLLTKYDNLFETSFPYSMGWHGAPTGSEAGANWDHWQLHAHYYPPLLRSATVRKFM :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: CCDS59 SIMKKLLTKYDNLFETSFPYSMGWHGAPTGSEAGANWNHWQLHAHYYPPLLRSATVRKFM 170 180 190 200 210 220 340 350 360 370 pF1KE4 VGYEMLAQAQRDLTPEQAAERLRALPEVHYHLGQKDRETATIA ::::::::::::::::::::::::::::::::::::::::::: CCDS59 VGYEMLAQAQRDLTPEQAAERLRALPEVHYHLGQKDRETATIA 230 240 250 260 270 379 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:07:44 2016 done: Sat Nov 5 23:07:45 2016 Total Scan time: 2.800 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]