FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8957, 333 aa 1>>>pF1KB8957 333 - 333 aa - 333 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.7330+/-0.000946; mu= 4.6039+/- 0.057 mean_var=361.6873+/-74.769, 0's: 0 Z-trim(116.4): 136 B-trim: 0 in 0/50 Lambda= 0.067438 statistics sampled from 16854 (16998) to 16854 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.522), width: 16 Scan time: 2.320 The best scores are: opt bits E(32554) CCDS5940.1 EN2 gene_id:2020|Hs108|chr7 ( 333) 2291 236.0 3.2e-62 CCDS2123.1 EN1 gene_id:2019|Hs108|chr2 ( 392) 774 88.5 9.4e-18 >>CCDS5940.1 EN2 gene_id:2020|Hs108|chr7 (333 aa) initn: 2291 init1: 2291 opt: 2291 Z-score: 1230.6 bits: 236.0 E(32554): 3.2e-62 Smith-Waterman score: 2291; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333) 10 20 30 40 50 60 pF1KB8 MEENDPKPGEAAAAVEGQRQPESSPGGGSGGGGGSSPGEADTGRRRALMLPAVLQAPGNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 MEENDPKPGEAAAAVEGQRQPESSPGGGSGGGGGSSPGEADTGRRRALMLPAVLQAPGNH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 QHPHRITNFFIDNILRPEFGRRKDAGTCCAGAGGGRGGGAGGEGGASGAEGGGGAGGSEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 QHPHRITNFFIDNILRPEFGRRKDAGTCCAGAGGGRGGGAGGEGGASGAEGGGGAGGSEQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 LLGSGSREPRQNPPCAPGAGGPLPAAGSDSPGDGEGGSKTLSLHGGAKKGGDPGGPLDGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 LLGSGSREPRQNPPCAPGAGGPLPAAGSDSPGDGEGGSKTLSLHGGAKKGGDPGGPLDGS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 LKARGLGGGDLSVSSDSDSSQAGANLGAQPMLWPAWVYCTRYSDRPSSGPRSRKPKKKNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 LKARGLGGGDLSVSSDSDSSQAGANLGAQPMLWPAWVYCTRYSDRPSSGPRSRKPKKKNP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 NKEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 NKEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKIK 250 260 270 280 290 300 310 320 330 pF1KB8 KATGNKNTLAVHLMAQGLYNHSTTAKEGKSDSE ::::::::::::::::::::::::::::::::: CCDS59 KATGNKNTLAVHLMAQGLYNHSTTAKEGKSDSE 310 320 330 >>CCDS2123.1 EN1 gene_id:2019|Hs108|chr2 (392 aa) initn: 897 init1: 740 opt: 774 Z-score: 432.2 bits: 88.5 E(32554): 9.4e-18 Smith-Waterman score: 891; 51.3% identity (67.3% similar) in 312 aa overlap (51-333:83-392) 30 40 50 60 70 pF1KB8 PESSPGGGSGGGGGSSPGEADTGRRRALMLPAVLQAPGNHQHP----HRITNFFIDNILR : : ::... .: :: :::::::::: CCDS21 QPAPPSPPAAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILR 60 70 80 90 100 110 80 90 100 110 120 130 pF1KB8 PEFGRRKDAGTCCAGAGGGRGGGAGGEGGASGAEGGGGAGGSEQLLGSGSREPRQNPP-C :.:: .:. .... ::::: :: . : :.: . . :.: : : CCDS21 PDFGCKKEQPPPQLLVAAAARGGAGG-GGRVERDRGQTAAGRDPVHPLGTRAPGAASLLC 120 130 140 150 160 170 140 150 160 170 pF1KB8 APGAGGPLPAAGSDSPGDGEGGSKTL------------------------SLHGGAKKGG :: :. : ::. . : :.::. : ::. .:: CCDS21 APDANCG-PPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGG 180 190 200 210 220 230 180 190 200 210 220 230 pF1KB8 DPGGPLDGSLKARGLGGGDLSVSSDSDSSQAGANLGAQPMLWPAWVYCTRYSDRPSSGPR :.: . : :. . . ...... . . . ::..::::::::::::::::::: CCDS21 GAGSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPR 240 250 260 270 280 290 240 250 260 270 280 290 pF1KB8 SRKPKKKNPNKEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIW .:: :::. .:::::::::::::::::::::::.:::.::::::.::::::::::::::: CCDS21 TRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIW 300 310 320 330 340 350 300 310 320 330 pF1KB8 FQNKRAKIKKATGNKNTLAVHLMAQGLYNHSTTAKEGKSDSE ::::::::::::: :: ::.:::::::::::::. . :..:: CCDS21 FQNKRAKIKKATGIKNGLALHLMAQGLYNHSTTTVQDKDESE 360 370 380 390 333 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:46:58 2016 done: Tue Nov 8 10:46:58 2016 Total Scan time: 2.320 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]