FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3082, 243 aa 1>>>pF1KE3082 243 - 243 aa - 243 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7180+/-0.000844; mu= 11.3749+/- 0.051 mean_var=58.4404+/-11.546, 0's: 0 Z-trim(105.8): 8 B-trim: 0 in 0/50 Lambda= 0.167771 statistics sampled from 8624 (8627) to 8624 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.265), width: 16 Scan time: 2.160 The best scores are: opt bits E(32554) CCDS5888.1 TPK1 gene_id:27010|Hs108|chr7 ( 243) 1644 406.2 1e-113 CCDS55178.1 TPK1 gene_id:27010|Hs108|chr7 ( 194) 809 204.0 5.8e-53 >>CCDS5888.1 TPK1 gene_id:27010|Hs108|chr7 (243 aa) initn: 1644 init1: 1644 opt: 1644 Z-score: 2154.9 bits: 406.2 E(32554): 1e-113 Smith-Waterman score: 1644; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243) 10 20 30 40 50 60 pF1KE3 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQPGKHRLHVDTGMEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 VIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQPGKHRLHVDTGMEG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMA 190 200 210 220 230 240 pF1KE3 IKS ::: CCDS58 IKS >>CCDS55178.1 TPK1 gene_id:27010|Hs108|chr7 (194 aa) initn: 1322 init1: 809 opt: 809 Z-score: 1064.3 bits: 204.0 E(32554): 5.8e-53 Smith-Waterman score: 1228; 79.8% identity (79.8% similar) in 243 aa overlap (1-243:1-194) 10 20 30 40 50 60 pF1KE3 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGER 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 ESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLK-- 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 VIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQPGKHRLHVDTGMEG ::::::::::::: CCDS55 -----------------------------------------------GKHRLHVDTGMEG 120 130 190 200 210 220 230 240 pF1KE3 DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMA 140 150 160 170 180 190 pF1KE3 IKS ::: CCDS55 IKS 243 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:16:13 2016 done: Sun Nov 6 05:16:13 2016 Total Scan time: 2.160 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]