FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1739, 244 aa 1>>>pF1KE1739 244 - 244 aa - 244 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8892+/-0.000652; mu= 12.9333+/- 0.039 mean_var=87.6230+/-17.706, 0's: 0 Z-trim(113.3): 15 B-trim: 129 in 1/48 Lambda= 0.137014 statistics sampled from 13912 (13924) to 13912 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.428), width: 16 Scan time: 2.630 The best scores are: opt bits E(32554) CCDS4703.1 LTB gene_id:4050|Hs108|chr6 ( 244) 1627 330.6 6e-91 CCDS4704.1 LTB gene_id:4050|Hs108|chr6 ( 77) 337 75.3 1.4e-14 >>CCDS4703.1 LTB gene_id:4050|Hs108|chr6 (244 aa) initn: 1627 init1: 1627 opt: 1627 Z-score: 1746.3 bits: 330.6 E(32554): 6e-91 Smith-Waterman score: 1627; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244) 10 20 30 40 50 60 pF1KE1 MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLVTETAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLVTETAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 PGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 DAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 GAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFGA 190 200 210 220 230 240 pF1KE1 VMVG :::: CCDS47 VMVG >>CCDS4704.1 LTB gene_id:4050|Hs108|chr6 (77 aa) initn: 337 init1: 337 opt: 337 Z-score: 375.5 bits: 75.3 E(32554): 1.4e-14 Smith-Waterman score: 337; 77.3% identity (86.7% similar) in 75 aa overlap (1-75:1-75) 10 20 30 40 50 60 pF1KE1 MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLVTETAD :::::::::::::::::::::::::::::::::::::::::::::::::::::: .. . CCDS47 MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLGFRSCQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFS .: : . ..:: CCDS47 RRSQKQISAPGSQLPTS 70 244 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:58:02 2016 done: Sun Nov 6 09:58:02 2016 Total Scan time: 2.630 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]