FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1642, 156 aa
  1>>>pF1KE1642 156 - 156 aa - 156 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3586+/-0.000261; mu= 4.5964+/- 0.016
 mean_var=148.1547+/-29.328, 0's: 0 Z-trim(125.1): 16  B-trim: 17 in 1/55
 Lambda= 0.105370
 statistics sampled from 48172 (48199) to 48172 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.849), E-opt: 0.2 (0.565), width:  16
 Scan time:  4.960

The best scores are:                                      opt bits E(85289)
NP_003888 (OMIM: 602996) radiation-inducible immed ( 156) 1064 171.6 4.5e-43


>>NP_003888 (OMIM: 602996) radiation-inducible immediate  (156 aa)
 initn: 1064 init1: 1064 opt: 1064  Z-score: 894.3  bits: 171.6 E(85289): 4.5e-43
Smith-Waterman score: 1064; 99.4% identity (99.4% similar) in 156 aa overlap (1-156:1-156)

               10        20        30        40        50        60
pF1KE1 MCHSRSCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MCHSRSCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASL
               70        80        90       100       110       120

              130       140       150      
pF1KE1 APTPVSPVLEPFNLTSEPSDYALDLSTFLQQHPAAF
       :::::: :::::::::::::::::::::::::::::
NP_003 APTPVSAVLEPFNLTSEPSDYALDLSTFLQQHPAAF
              130       140       150      




156 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:58:38 2016 done: Sun Nov  6 09:58:39 2016
 Total Scan time:  4.960 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]