FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1642, 156 aa
  1>>>pF1KE1642 156 - 156 aa - 156 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8474+/-0.000617; mu= 7.9496+/- 0.038
 mean_var=144.2006+/-28.820, 0's: 0 Z-trim(117.6): 5  B-trim: 0 in 0/53
 Lambda= 0.106805
 statistics sampled from 18344 (18349) to 18344 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.852), E-opt: 0.2 (0.564), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS4689.1 IER3 gene_id:8870|Hs108|chr6            ( 156) 1064 173.6 4.3e-44


>>CCDS4689.1 IER3 gene_id:8870|Hs108|chr6                 (156 aa)
 initn: 1064 init1: 1064 opt: 1064  Z-score: 905.1  bits: 173.6 E(32554): 4.3e-44
Smith-Waterman score: 1064; 99.4% identity (99.4% similar) in 156 aa overlap (1-156:1-156)

               10        20        30        40        50        60
pF1KE1 MCHSRSCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MCHSRSCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASL
               70        80        90       100       110       120

              130       140       150      
pF1KE1 APTPVSPVLEPFNLTSEPSDYALDLSTFLQQHPAAF
       :::::: :::::::::::::::::::::::::::::
CCDS46 APTPVSAVLEPFNLTSEPSDYALDLSTFLQQHPAAF
              130       140       150      




156 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:58:38 2016 done: Sun Nov  6 09:58:38 2016
 Total Scan time:  2.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]