FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1628, 144 aa 1>>>pF1KE1628 144 - 144 aa - 144 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0768+/-0.000251; mu= 13.6790+/- 0.016 mean_var=62.6714+/-12.540, 0's: 0 Z-trim(121.6): 1 B-trim: 1654 in 1/54 Lambda= 0.162009 statistics sampled from 38377 (38379) to 38377 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.45), width: 16 Scan time: 5.510 The best scores are: opt bits E(85289) NP_000749 (OMIM: 138960) granulocyte-macrophage co ( 144) 972 234.4 4.8e-62 >>NP_000749 (OMIM: 138960) granulocyte-macrophage colony (144 aa) initn: 972 init1: 972 opt: 972 Z-score: 1234.9 bits: 234.4 E(85289): 4.8e-62 Smith-Waterman score: 972; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144) 10 20 30 40 50 60 pF1KE1 MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 SEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITF 70 80 90 100 110 120 130 140 pF1KE1 ESFKENLKDFLLVIPFDCWEPVQE :::::::::::::::::::::::: NP_000 ESFKENLKDFLLVIPFDCWEPVQE 130 140 144 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 10:00:26 2016 done: Sun Nov 6 10:00:26 2016 Total Scan time: 5.510 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]