FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6610, 260 aa 1>>>pF1KE6610 260 - 260 aa - 260 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0176+/-0.000394; mu= 6.8434+/- 0.024 mean_var=117.5408+/-24.186, 0's: 0 Z-trim(115.4): 17 B-trim: 580 in 2/49 Lambda= 0.118299 statistics sampled from 25826 (25834) to 25826 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.303), width: 16 Scan time: 5.220 The best scores are: opt bits E(85289) NP_055701 (OMIM: 612497) ribosome biogenesis prote ( 260) 1725 305.2 7.8e-83 XP_011541400 (OMIM: 612497) PREDICTED: ribosome bi ( 271) 1718 304.0 1.9e-82 NP_001258594 (OMIM: 612497) ribosome biogenesis pr ( 189) 1162 209.0 5.1e-54 XP_016864442 (OMIM: 612497) PREDICTED: ribosome bi ( 193) 1162 209.0 5.1e-54 XP_016864441 (OMIM: 612497) PREDICTED: ribosome bi ( 200) 1155 207.8 1.2e-53 >>NP_055701 (OMIM: 612497) ribosome biogenesis protein N (260 aa) initn: 1725 init1: 1725 opt: 1725 Z-score: 1608.1 bits: 305.2 E(85289): 7.8e-83 Smith-Waterman score: 1725; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260) 10 20 30 40 50 60 pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 190 200 210 220 230 240 250 260 pF1KE6 YAQVTNNPENDGCINAVLLV :::::::::::::::::::: NP_055 YAQVTNNPENDGCINAVLLV 250 260 >>XP_011541400 (OMIM: 612497) PREDICTED: ribosome biogen (271 aa) initn: 1718 init1: 1718 opt: 1718 Z-score: 1601.4 bits: 304.0 E(85289): 1.9e-82 Smith-Waterman score: 1718; 100.0% identity (100.0% similar) in 259 aa overlap (2-260:13-271) 10 20 30 40 pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKL :::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MKQEGGIGTVRTPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE6 YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE6 RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE6 FIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGL 190 200 210 220 230 240 230 240 250 260 pF1KE6 VTQGGKVIWGKYAQVTNNPENDGCINAVLLV ::::::::::::::::::::::::::::::: XP_011 VTQGGKVIWGKYAQVTNNPENDGCINAVLLV 250 260 270 >>NP_001258594 (OMIM: 612497) ribosome biogenesis protei (189 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1090.9 bits: 209.0 E(85289): 5.1e-54 Smith-Waterman score: 1162; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174) 10 20 30 40 50 60 pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMENMPRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK NP_001 PTILKMMDV >>XP_016864442 (OMIM: 612497) PREDICTED: ribosome biogen (193 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1090.7 bits: 209.0 E(85289): 5.1e-54 Smith-Waterman score: 1162; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174) 10 20 30 40 50 60 pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMRRGFTV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK XP_016 LARMVSISVIRPP 190 >>XP_016864441 (OMIM: 612497) PREDICTED: ribosome biogen (200 aa) initn: 1155 init1: 1155 opt: 1155 Z-score: 1084.0 bits: 207.8 E(85289): 1.2e-53 Smith-Waterman score: 1155; 100.0% identity (100.0% similar) in 173 aa overlap (2-174:13-185) 10 20 30 40 pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKL :::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MKQEGGIGTVRTPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE6 YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE6 RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYER 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE6 FIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGL ::::: XP_016 FIRPMENMPRLPTILKMMDV 190 200 260 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:45:10 2016 done: Tue Nov 8 14:45:11 2016 Total Scan time: 5.220 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]