FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6610, 260 aa 1>>>pF1KE6610 260 - 260 aa - 260 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8041+/-0.000949; mu= 8.1495+/- 0.057 mean_var=109.3160+/-21.482, 0's: 0 Z-trim(108.1): 19 B-trim: 0 in 0/50 Lambda= 0.122668 statistics sampled from 9968 (9977) to 9968 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.306), width: 16 Scan time: 1.790 The best scores are: opt bits E(32554) CCDS4025.1 NSA2 gene_id:10412|Hs108|chr5 ( 260) 1725 315.7 2e-86 CCDS75260.1 NSA2 gene_id:10412|Hs108|chr5 ( 189) 1162 216.0 1.5e-56 >>CCDS4025.1 NSA2 gene_id:10412|Hs108|chr5 (260 aa) initn: 1725 init1: 1725 opt: 1725 Z-score: 1665.1 bits: 315.7 E(32554): 2e-86 Smith-Waterman score: 1725; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260) 10 20 30 40 50 60 pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK 190 200 210 220 230 240 250 260 pF1KE6 YAQVTNNPENDGCINAVLLV :::::::::::::::::::: CCDS40 YAQVTNNPENDGCINAVLLV 250 260 >>CCDS75260.1 NSA2 gene_id:10412|Hs108|chr5 (189 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1128.7 bits: 216.0 E(32554): 1.5e-56 Smith-Waterman score: 1162; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174) 10 20 30 40 50 60 pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMENMPRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK CCDS75 PTILKMMDV 260 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:45:10 2016 done: Tue Nov 8 14:45:10 2016 Total Scan time: 1.790 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]