(Circular) (Six-base) MAPSORT of: pFN21AE2207.seq Check: 6017 from: 1 to: 5662 pFN21AE2207 5662 bp With 182 enzymes: SgfI * January 31, 2011 17:48 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3472 278 Size: 53 83 186 936 1936 2468 Fragments arranged by size: 2468 1936 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3005 1937 Size: 1068 4594 Acc65I G'GTAC_C Cuts at: 2983 2983 Size: 5662 AclI AA'CG_TT Cuts at: 1563 3789 4162 1563 Size: 2226 373 3063 Fragments arranged by size: 3063 2226 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2864 3725 5109 5377 1632 Size: 1232 861 1384 268 1917 Fragments arranged by size: 1917 1384 1232 861 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5465 AflIII A'CryG_T Cuts at: 1203 4561 5538 1203 Size: 3358 977 1327 Fragments arranged by size: 3358 1327 977 AgeI A'CCGG_T Cuts at: 4493 4493 Size: 5662 AhdI GACnn_n'nnGTC Cuts at: 4391 4391 Size: 5662 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5662 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5662 AlwNI CAG_nnn'CTG Cuts at: 2407 2441 3405 4977 2407 Size: 34 964 1572 3092 Fragments arranged by size: 3092 1572 964 34 ApaI G_GGCC'C Cuts at: 2330 2330 Size: 5662 ApaLI G'TGCA_C Cuts at: 3719 4875 3719 Size: 1156 4506 ApoI r'AATT_y Cuts at: 1493 2971 3197 3349 5458 1493 Size: 1478 226 152 2109 1697 Fragments arranged by size: 2109 1697 1478 226 152 AseI AT'TA_AT Cuts at: 160 1032 2253 4216 160 Size: 872 1221 1963 1606 Fragments arranged by size: 1963 1606 1221 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5662 AvaI C'yCGr_G Cuts at: 1870 1943 2940 2987 1870 Size: 73 997 47 4545 Fragments arranged by size: 4545 997 73 47 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 2764 2797 2764 Size: 33 5629 BamHI G'GATC_C Cuts at: 2008 2871 2992 3359 2008 Size: 863 121 367 4311 Fragments arranged by size: 4311 863 367 121 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2983 4438 618 Size: 325 217 627 1196 1455 1842 Fragments arranged by size: 1842 1455 1196 627 325 217 BanII G_rGCy'C Cuts at: 1391 2330 2981 1391 Size: 939 651 4072 Fragments arranged by size: 4072 939 651 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4691 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3853 3887 1903 Size: 34 1916 34 3678 Fragments arranged by size: 3678 1916 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3554 4764 3554 Size: 1210 4452 BclI T'GATC_A Cuts at: 1548 1548 Size: 5662 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4273 136 Size: 107 122 71 631 605 2601 1525 Fragments arranged by size: 2601 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5657 5657 Size: 5662 BlpI GC'TnA_GC Cuts at: 3079 3079 Size: 5662 Bme1580I G_kGCm'C Cuts at: 1790 2330 3723 4879 1790 Size: 540 1393 1156 2573 Fragments arranged by size: 2573 1393 1156 540 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5662 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3393 4351 442 Size: 416 53 83 399 24 1976 958 1753 Fragments arranged by size: 1976 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5662 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2945 4322 1239 Size: 1706 1377 2579 Fragments arranged by size: 2579 1706 1377 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3787 4652 4950 3787 Size: 865 298 4499 Fragments arranged by size: 4499 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4325 882 Size: 617 2826 2219 Fragments arranged by size: 2826 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3453 493 Size: 711 2249 2702 Fragments arranged by size: 2702 2249 711 BsaBI GATnn'nnATC Cuts at: 5656 5656 Size: 5662 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3469 3851 4486 275 Size: 53 83 186 936 1936 382 635 1451 Fragments arranged by size: 1936 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2466 4095 4493 4767 4914 5325 2466 Size: 1629 398 274 147 411 2803 Fragments arranged by size: 2803 1629 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2684 2714 1178 Size: 30 165 30 1281 30 4126 Fragments arranged by size: 4126 1281 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2187 1186 Size: 1001 4661 BseYI C'CCAG_C Cuts at: 2472 4865 5361 2472 Size: 2393 496 2773 Fragments arranged by size: 2773 2393 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2382 2872 2908 1163 Size: 573 646 490 36 3917 Fragments arranged by size: 3917 646 573 490 36 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3112 3873 4901 1540 Size: 275 186 1111 761 1028 2301 Fragments arranged by size: 2301 1111 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2277 3723 3808 4879 2277 Size: 1446 85 1071 3060 Fragments arranged by size: 3060 1446 1071 85 BsmI GAATG_Cn' Cuts at: 2582 3173 3266 2582 Size: 591 93 4978 Fragments arranged by size: 4978 591 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2277 2330 2981 3723 3808 4879 1391 Size: 399 487 53 651 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 651 487 399 85 53 BspEI T'CCGG_A Cuts at: 2466 5325 2466 Size: 2859 2803 BspHI T'CATG_A Cuts at: 2236 3551 5281 2236 Size: 1315 1730 2617 Fragments arranged by size: 2617 1730 1315 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2200 2672 3017 844 Size: 1356 472 345 3489 Fragments arranged by size: 3489 1356 472 345 BsrBI CCG'CTC Cuts at: 1394 1823 3549 1394 Size: 429 1726 3507 Fragments arranged by size: 3507 1726 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2161 4157 4331 65 Size: 1183 913 1996 174 1396 Fragments arranged by size: 1996 1396 1183 913 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2619 4306 4493 1700 Size: 110 809 1687 187 2869 Fragments arranged by size: 2869 1687 809 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5662 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5662 BssSI C'ACGA_G Cuts at: 3722 4734 3722 Size: 1012 4650 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5662 BstBI TT'CG_AA Cuts at: 4466 4466 Size: 5662 BstEII G'GTnAC_C Cuts at: 1184 2418 1184 Size: 1234 4428 BstYI r'GATC_y Cuts at: 1972 2008 2871 2992 3359 3744 3761 5213 5299 Size: 36 863 121 367 385 17 1452 86 Cuts at: 5299 5311 5657 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 863 385 367 346 121 86 36 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 4171 Fragments arranged by size: 4171 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2861 487 Size: 683 56 1635 3288 Fragments arranged by size: 3288 1635 683 56 BtsI GCAGTG_nn' Cuts at: 2035 2392 2580 2630 2695 2758 3178 3972 3992 Size: 357 188 50 65 63 420 794 20 Cuts at: 3992 2035 Size: 3705 Fragments arranged by size: 3705 794 420 357 188 65 63 50 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5662 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5627 DraI TTT'AAA Cuts at: 2966 2966 Size: 5662 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4669 809 Size: 507 3353 1802 Fragments arranged by size: 3353 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3109 3998 5627 Size: 54 1425 50 275 18 1279 889 1629 Cuts at: 5627 8 Size: 43 Fragments arranged by size: 1629 1425 1279 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3109 1537 Size: 275 1297 4090 Fragments arranged by size: 4090 1297 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2398 3592 1353 Size: 1045 1194 3423 Fragments arranged by size: 3423 1194 1045 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4249 4623 4769 387 Size: 1064 138 2660 374 146 1280 Fragments arranged by size: 2660 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2864 2945 3725 4322 5109 5377 1239 Size: 393 1232 81 780 597 787 268 1524 Fragments arranged by size: 1524 1232 787 780 597 393 268 81 EcoNI CCTnn'n_nnAGG Cuts at: 2832 2832 Size: 5662 EcoO109I rG'GnC_Cy Cuts at: 2171 2326 2327 2521 2592 2171 Size: 155 1 194 71 5241 Fragments arranged by size: 5241 194 155 71 1 EcoRI G'AATT_C Cuts at: 2971 3349 2971 Size: 378 5284 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2527 2704 2527 Size: 177 5485 FspI TGC'GCA Cuts at: 4168 4168 Size: 5662 HaeII r_GCGC'y Cuts at: 1678 4809 1678 Size: 3131 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4303 4335 4377 4409 1373 Size: 32 135 32 2731 32 42 32 2626 Fragments arranged by size: 2731 2626 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3006 3252 669 Size: 988 281 1068 246 3079 Fragments arranged by size: 3079 1068 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5662 HpaI GTT'AAC Cuts at: 3252 3252 Size: 5662 KpnI G_GTAC'C Cuts at: 2987 2987 Size: 5662 MfeI C'AATT_G Cuts at: 3261 3261 Size: 5662 MluI A'CGCG_T Cuts at: 5538 5538 Size: 5662 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2928 4776 4960 1305 Size: 1623 1848 184 2007 Fragments arranged by size: 2007 1848 1623 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3840 Fragments arranged by size: 3840 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2028 3620 3979 4138 518 Size: 648 862 1592 359 159 2042 Fragments arranged by size: 2042 1592 862 648 359 159 MspA1I CmG'CkG Cuts at: 1606 3078 3755 4903 5148 1606 Size: 1472 677 1148 245 2120 Fragments arranged by size: 2120 1472 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4171 Fragments arranged by size: 4171 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5662 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5662 NotI GC'GGCC_GC Cuts at: 3109 3109 Size: 5662 NspI r_CATG'y Cuts at: 1132 1229 2303 2671 3020 4565 1132 Size: 97 1074 368 349 1545 2229 Fragments arranged by size: 2229 1545 1074 368 349 97 PasI CC'CwG_GG Cuts at: 1348 2882 1348 Size: 1534 4128 PciI A'CATG_T Cuts at: 4561 4561 Size: 5662 PflMI CCAn_nnn'nTGG Cuts at: 1108 2441 1108 Size: 1333 4329 PmeI GTTT'AAAC Cuts at: 2966 2966 Size: 5662 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3731 3763 5244 5276 3731 Size: 32 1481 32 4117 Fragments arranged by size: 4117 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2521 2592 2521 Size: 71 5591 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5662 PsiI TTA'TAA Cuts at: 3232 3232 Size: 5662 PspOMI G'GGCC_C Cuts at: 2326 2326 Size: 5662 PstI C_TGCA'G Cuts at: 830 3014 830 Size: 2184 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5662 SalI G'TCGA_C Cuts at: 1936 3004 1936 Size: 1068 4594 SbfI CC_TGCA'GG Cuts at: 3014 3014 Size: 5662 ScaI AGT'ACT Cuts at: 2307 3910 5622 2307 Size: 1603 1712 2347 Fragments arranged by size: 2347 1712 1603 SfcI C'TryA_G Cuts at: 826 1045 3010 4145 4826 5017 826 Size: 219 1965 1135 681 191 1471 Fragments arranged by size: 1965 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5662 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5662 SmaI CCC'GGG Cuts at: 1872 2942 2989 1872 Size: 1070 47 4545 Fragments arranged by size: 4545 1070 47 SmlI C'TyrA_G Cuts at: 820 1017 1943 3766 4667 4929 820 Size: 197 926 1823 901 262 1553 Fragments arranged by size: 1823 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3453 493 Size: 2960 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5662 SphI G_CATG'C Cuts at: 1132 3020 1132 Size: 1888 3774 SspI AAT'ATT Cuts at: 5 52 3586 5 Size: 47 3534 2081 Fragments arranged by size: 3534 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5662 StyI C'CwwG_G Cuts at: 513 1065 2004 3101 513 Size: 552 939 1097 3074 Fragments arranged by size: 3074 1097 939 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3689 3706 3859 4044 4489 325 Size: 1255 2109 17 153 185 445 1498 Fragments arranged by size: 2109 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2305 3908 5620 Size: 274 80 33 51 1443 328 1603 1712 Cuts at: 5620 96 Size: 138 Fragments arranged by size: 1712 1603 1443 328 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5622 5654 5622 Size: 32 5630 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5662 XbaI T'CTAG_A Cuts at: 2768 2998 2768 Size: 230 5432 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2021 2021 Size: 5662 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5662 XmaI C'CCGG_G Cuts at: 1870 2940 2987 1870 Size: 1070 47 4545 Fragments arranged by size: 4545 1070 47 XmnI GAAnn'nnTTC Cuts at: 3791 3791 Size: 5662 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3470 276 Size: 53 83 186 936 1936 2468 Fragments arranged by size: 2468 1936 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI