FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5126, 141 aa 1>>>pF1KE5126 141 - 141 aa - 141 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1438+/-0.00035; mu= 12.5732+/- 0.022 mean_var=64.5914+/-12.953, 0's: 0 Z-trim(113.4): 11 B-trim: 0 in 0/53 Lambda= 0.159583 statistics sampled from 22732 (22736) to 22732 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.267), width: 16 Scan time: 4.180 The best scores are: opt bits E(85289) NP_001177192 (OMIM: 606997) nuclear nucleic acid-b ( 141) 901 215.7 2e-56 NP_775269 (OMIM: 606997) nuclear nucleic acid-bind ( 141) 901 215.7 2e-56 NP_001177194 (OMIM: 606997) nuclear nucleic acid-b ( 141) 901 215.7 2e-56 NP_006324 (OMIM: 606997) nuclear nucleic acid-bind ( 141) 901 215.7 2e-56 >>NP_001177192 (OMIM: 606997) nuclear nucleic acid-bindi (141 aa) initn: 901 init1: 901 opt: 901 Z-score: 1134.1 bits: 215.7 E(85289): 2e-56 Smith-Waterman score: 901; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KE5 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 70 80 90 100 110 120 130 140 pF1KE5 ALWEPKSKNASKVANKGKSKS ::::::::::::::::::::: NP_001 ALWEPKSKNASKVANKGKSKS 130 140 >>NP_775269 (OMIM: 606997) nuclear nucleic acid-binding (141 aa) initn: 901 init1: 901 opt: 901 Z-score: 1134.1 bits: 215.7 E(85289): 2e-56 Smith-Waterman score: 901; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KE5 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_775 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 70 80 90 100 110 120 130 140 pF1KE5 ALWEPKSKNASKVANKGKSKS ::::::::::::::::::::: NP_775 ALWEPKSKNASKVANKGKSKS 130 140 >>NP_001177194 (OMIM: 606997) nuclear nucleic acid-bindi (141 aa) initn: 901 init1: 901 opt: 901 Z-score: 1134.1 bits: 215.7 E(85289): 2e-56 Smith-Waterman score: 901; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KE5 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 70 80 90 100 110 120 130 140 pF1KE5 ALWEPKSKNASKVANKGKSKS ::::::::::::::::::::: NP_001 ALWEPKSKNASKVANKGKSKS 130 140 >>NP_006324 (OMIM: 606997) nuclear nucleic acid-binding (141 aa) initn: 901 init1: 901 opt: 901 Z-score: 1134.1 bits: 215.7 E(85289): 2e-56 Smith-Waterman score: 901; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KE5 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 70 80 90 100 110 120 130 140 pF1KE5 ALWEPKSKNASKVANKGKSKS ::::::::::::::::::::: NP_006 ALWEPKSKNASKVANKGKSKS 130 140 141 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:18:48 2016 done: Tue Nov 8 07:18:49 2016 Total Scan time: 4.180 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]