FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6575, 195 aa 1>>>pF1KE6575 195 - 195 aa - 195 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0353+/-0.000305; mu= 9.9736+/- 0.019 mean_var=83.5480+/-16.597, 0's: 0 Z-trim(119.0): 35 B-trim: 934 in 1/52 Lambda= 0.140316 statistics sampled from 32496 (32531) to 32496 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.381), width: 16 Scan time: 4.770 The best scores are: opt bits E(85289) NP_898882 (OMIM: 180040,610612) protein RD3 [Homo ( 195) 1299 271.9 4.5e-73 NP_001158160 (OMIM: 180040,610612) protein RD3 [Ho ( 195) 1299 271.9 4.5e-73 XP_016856640 (OMIM: 180040,610612) PREDICTED: prot ( 207) 1299 272.0 4.7e-73 >>NP_898882 (OMIM: 180040,610612) protein RD3 [Homo sapi (195 aa) initn: 1299 init1: 1299 opt: 1299 Z-score: 1432.9 bits: 271.9 E(85289): 4.5e-73 Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195) 10 20 30 40 50 60 pF1KE6 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_898 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_898 SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_898 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP 130 140 150 160 170 180 190 pF1KE6 LRSWSMPEFRAPKAD ::::::::::::::: NP_898 LRSWSMPEFRAPKAD 190 >>NP_001158160 (OMIM: 180040,610612) protein RD3 [Homo s (195 aa) initn: 1299 init1: 1299 opt: 1299 Z-score: 1432.9 bits: 271.9 E(85289): 4.5e-73 Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195) 10 20 30 40 50 60 pF1KE6 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP 130 140 150 160 170 180 190 pF1KE6 LRSWSMPEFRAPKAD ::::::::::::::: NP_001 LRSWSMPEFRAPKAD 190 >>XP_016856640 (OMIM: 180040,610612) PREDICTED: protein (207 aa) initn: 1299 init1: 1299 opt: 1299 Z-score: 1432.5 bits: 272.0 E(85289): 4.7e-73 Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:13-207) 10 20 30 40 pF1KE6 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERS :::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MHICPVSAGPGAMSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERS 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE6 NAVRKVCTGVDYSWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NAVRKVCTGVDYSWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQE 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE6 PEVQEVSQLFRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PEVQEVSQLFRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRT 130 140 150 160 170 180 170 180 190 pF1KE6 ISEDVERDTPPPLRSWSMPEFRAPKAD ::::::::::::::::::::::::::: XP_016 ISEDVERDTPPPLRSWSMPEFRAPKAD 190 200 195 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:31:48 2016 done: Tue Nov 8 14:31:49 2016 Total Scan time: 4.770 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]