FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6575, 195 aa 1>>>pF1KE6575 195 - 195 aa - 195 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7751+/-0.000657; mu= 11.4983+/- 0.040 mean_var=78.6326+/-15.809, 0's: 0 Z-trim(111.7): 15 B-trim: 0 in 0/52 Lambda= 0.144635 statistics sampled from 12615 (12620) to 12615 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.388), width: 16 Scan time: 1.410 The best scores are: opt bits E(32554) CCDS1498.1 RD3 gene_id:343035|Hs108|chr1 ( 195) 1299 279.7 7.8e-76 CCDS58338.1 RD3L gene_id:647286|Hs108|chr14 ( 198) 275 66.0 1.6e-11 >>CCDS1498.1 RD3 gene_id:343035|Hs108|chr1 (195 aa) initn: 1299 init1: 1299 opt: 1299 Z-score: 1475.0 bits: 279.7 E(32554): 7.8e-76 Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195) 10 20 30 40 50 60 pF1KE6 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP 130 140 150 160 170 180 190 pF1KE6 LRSWSMPEFRAPKAD ::::::::::::::: CCDS14 LRSWSMPEFRAPKAD 190 >>CCDS58338.1 RD3L gene_id:647286|Hs108|chr14 (198 aa) initn: 231 init1: 197 opt: 275 Z-score: 320.1 bits: 66.0 E(32554): 1.6e-11 Smith-Waterman score: 275; 29.8% identity (58.1% similar) in 198 aa overlap (1-189:1-194) 10 20 30 40 50 pF1KE6 MSLISWLRWNEAPSRLSTRSP-AEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVD : :..:..: . : :. : ...: .::. :: ...: :: .: : . :::: CCDS58 MPLFGWMKWPKNDSYKPTHYPGSDIVTKTLLRELKWHLKERERLIQEIENEQKVKKTGVD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 YSWLAS--TPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQL :.:: . .:..: .. :. ::: .: ...: : . :::..:::.. :. . CCDS58 YNWLRNYQNPHTTIPVT--EQRQLEVLCSQVQPCQTGTILSRFREVLAENDVLPWEIVYI 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 FRSVLQEVLERMKQEEEAHKLTRQWSLRPRG-SLATFKTRARISPFASDIRTISEDVERD :..::.. : . : . : . :. . :. . : . ..: ::: :... CCDS58 FKQVLKDFLSSSDRGSEQEDLEDSGSMDCSAPSVIQGDSSKRAD--KDEIPTISSYVDKN 120 130 140 150 160 170 180 190 pF1KE6 TPP--PL---RSWSMPEFRAPKAD : :. : :..: . CCDS58 TKDRFPVFSHRIWNLPYYHPSS 180 190 195 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:31:47 2016 done: Tue Nov 8 14:31:48 2016 Total Scan time: 1.410 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]