Result of FASTA (omim) for
pFN21AE5181
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5181, 114 aa
1>>>pF1KE5181 114 - 114 aa - 114 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8109+/-0.000369; mu= 12.0895+/- 0.023
mean_var=53.6536+/-10.816, 0's: 0 Z-trim(110.6): 71 B-trim: 158 in 1/51
Lambda= 0.175095
statistics sampled from 18962 (19034) to 18962 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.223), width: 16
Scan time: 3.310
The best scores are: opt bits E(85289)
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 714 188.2 2.4e-48
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 714 188.2 2.4e-48
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 702 185.2 2e-47
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 178 52.8 1.4e-07
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 178 52.8 1.4e-07
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 178 52.8 1.4e-07
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 171 51.0 4.2e-07
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 170 50.8 5e-07
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 166 49.8 1e-06
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 160 48.3 3.1e-06
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 156 47.2 5.5e-06
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 154 46.7 8.3e-06
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 153 46.5 9.2e-06
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 153 46.5 9.5e-06
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 153 46.5 9.5e-06
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 152 46.2 1.1e-05
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 153 46.6 1.4e-05
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 144 44.2 4.5e-05
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 144 44.2 4.5e-05
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 142 43.7 6.4e-05
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 140 43.2 9e-05
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 147 45.3 9.1e-05
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 138 42.7 0.00013
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 137 42.4 0.00016
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 137 42.5 0.00021
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 136 42.2 0.00022
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 134 41.7 0.00026
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 134 41.7 0.00026
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 134 41.7 0.00028
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 134 41.7 0.00032
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 131 40.9 0.00046
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 130 40.6 0.00051
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 128 40.2 0.001
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 128 40.2 0.0011
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 124 39.1 0.0015
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 124 39.2 0.0019
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 124 39.2 0.0019
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 113 36.3 0.0098
>>XP_011508167 (OMIM: 600250) PREDICTED: lymphotactin is (114 aa)
initn: 714 init1: 714 opt: 714 Z-score: 988.8 bits: 188.2 E(85289): 2.4e-48
Smith-Waterman score: 714; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE5 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
70 80 90 100 110
>>NP_002986 (OMIM: 600250) lymphotactin precursor [Homo (114 aa)
initn: 714 init1: 714 opt: 714 Z-score: 988.8 bits: 188.2 E(85289): 2.4e-48
Smith-Waterman score: 714; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE5 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
70 80 90 100 110
>>NP_003166 (OMIM: 604828) cytokine SCM-1 beta precursor (114 aa)
initn: 702 init1: 702 opt: 702 Z-score: 972.5 bits: 185.2 E(85289): 2e-47
Smith-Waterman score: 702; 98.2% identity (99.1% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE5 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
::::::::::::::::::::::::::: .:::::::::::::::::::::::::::::::
NP_003 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
70 80 90 100 110
>>XP_011514761 (OMIM: 602495) PREDICTED: C-C motif chemo (119 aa)
initn: 119 init1: 107 opt: 178 Z-score: 256.8 bits: 52.8 E(85289): 1.4e-07
Smith-Waterman score: 178; 31.3% identity (63.6% similar) in 99 aa overlap (6-98:11-106)
10 20 30 40 50
pF1KE5 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGS-
: .::.: :. . .:: : . :. ....:.: .:. .: .. :
XP_011 MAGLMTIVTSLLFLGVC---AHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRST
10 20 30 40 50
60 70 80 90 100
pF1KE5 -LRA-VIFITKRGLKVCADPQATWVRDVVRSMD---RKSNTRNNMIQTKPTGTQQSTNTA
:.: ::: ::.: . :.::. ::. ....: .:.. : . .:
XP_011 CLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQT
60 70 80 90 100 110
110
pF1KE5 VTLTG
XP_011 TC
>>XP_011514762 (OMIM: 602495) PREDICTED: C-C motif chemo (119 aa)
initn: 119 init1: 107 opt: 178 Z-score: 256.8 bits: 52.8 E(85289): 1.4e-07
Smith-Waterman score: 178; 31.3% identity (63.6% similar) in 99 aa overlap (6-98:11-106)
10 20 30 40 50
pF1KE5 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGS-
: .::.: :. . .:: : . :. ....:.: .:. .: .. :
XP_011 MAGLMTIVTSLLFLGVC---AHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRST
10 20 30 40 50
60 70 80 90 100
pF1KE5 -LRA-VIFITKRGLKVCADPQATWVRDVVRSMD---RKSNTRNNMIQTKPTGTQQSTNTA
:.: ::: ::.: . :.::. ::. ....: .:.. : . .:
XP_011 CLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQT
60 70 80 90 100 110
110
pF1KE5 VTLTG
XP_011 TC
>>NP_002982 (OMIM: 602495) C-C motif chemokine 24 precur (119 aa)
initn: 119 init1: 107 opt: 178 Z-score: 256.8 bits: 52.8 E(85289): 1.4e-07
Smith-Waterman score: 178; 31.3% identity (63.6% similar) in 99 aa overlap (6-98:11-106)
10 20 30 40 50
pF1KE5 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGS-
: .::.: :. . .:: : . :. ....:.: .:. .: .. :
NP_002 MAGLMTIVTSLLFLGVC---AHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRST
10 20 30 40 50
60 70 80 90 100
pF1KE5 -LRA-VIFITKRGLKVCADPQATWVRDVVRSMD---RKSNTRNNMIQTKPTGTQQSTNTA
:.: ::: ::.: . :.::. ::. ....: .:.. : . .:
NP_002 CLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQT
60 70 80 90 100 110
110
pF1KE5 VTLTG
NP_002 TC
>>NP_002977 (OMIM: 600807,601156,609423) eotaxin precurs (97 aa)
initn: 119 init1: 119 opt: 171 Z-score: 248.6 bits: 51.0 E(85289): 4.2e-07
Smith-Waterman score: 171; 36.7% identity (68.9% similar) in 90 aa overlap (5-90:7-94)
10 20 30 40 50
pF1KE5 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCV-SLTTQRLPVSRIKTYT-ITEGSL-
.: :: : . :. .:... .: :: .:.....:..:...: :: :.
NP_002 MKVSAALLWLLLIAA--AFSPQGLAGPASVPTTCCFNLANRKIPLQRLESYRRITSGKCP
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 -RAVIFITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
.:::: :: . .::::. ::.: .. .:.:: :
NP_002 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
60 70 80 90
>>NP_005614 (OMIM: 602283) C-C motif chemokine 8 precurs (99 aa)
initn: 177 init1: 133 opt: 170 Z-score: 247.1 bits: 50.8 E(85289): 5e-07
Smith-Waterman score: 170; 43.1% identity (75.9% similar) in 58 aa overlap (32-86:35-92)
10 20 30 40 50
pF1KE5 RLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYT-IT--EGSLRAV
: .. ....:..:...:: :: . .::
NP_005 AALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLESYTRITNIQCPKEAV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 IFITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
:: :::: .:::::. :::: .. .:.
NP_005 IFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
70 80 90
>>NP_005399 (OMIM: 601391) C-C motif chemokine 13 precur (98 aa)
initn: 128 init1: 120 opt: 166 Z-score: 241.7 bits: 49.8 E(85289): 1e-06
Smith-Waterman score: 166; 36.1% identity (75.4% similar) in 61 aa overlap (32-90:35-95)
10 20 30 40 50
pF1KE5 RLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSL--RAVI
: ....... ..:.:.:.:: . .:::
NP_005 AVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQKAVI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 FITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
: :: : ..::::. ::.. .. . ::..:
NP_005 FRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
70 80 90
>>NP_116738 (OMIM: 601392) C-C motif chemokine 14 isofor (109 aa)
initn: 160 init1: 105 opt: 160 Z-score: 232.8 bits: 48.3 E(85289): 3.1e-06
Smith-Waterman score: 160; 36.9% identity (67.7% similar) in 65 aa overlap (22-84:42-106)
10 20 30 40
pF1KE5 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTY--T
::. .. : . :: ..: .:: : :
NP_116 LLITIALGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKIPRQRIMDYYET
20 30 40 50 60 70
50 60 70 80 90 100
pF1KE5 ITEGSLRAVIFITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTA
.. : ...:::::: .::..:. ::.: ...:
NP_116 NSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
80 90 100
110
pF1KE5 VTLTG
114 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:21:11 2016 done: Mon Nov 7 22:21:12 2016
Total Scan time: 3.310 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]