FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5181, 114 aa 1>>>pF1KE5181 114 - 114 aa - 114 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9087+/-0.000817; mu= 11.4048+/- 0.048 mean_var=49.3093+/- 9.592, 0's: 0 Z-trim(104.4): 45 B-trim: 74 in 1/50 Lambda= 0.182646 statistics sampled from 7857 (7902) to 7857 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.243), width: 16 Scan time: 1.490 The best scores are: opt bits E(32554) CCDS1274.1 XCL1 gene_id:6375|Hs108|chr1 ( 114) 714 195.6 5.8e-51 CCDS1273.1 XCL2 gene_id:6846|Hs108|chr1 ( 114) 702 192.4 5.1e-50 >>CCDS1274.1 XCL1 gene_id:6375|Hs108|chr1 (114 aa) initn: 714 init1: 714 opt: 714 Z-score: 1028.5 bits: 195.6 E(32554): 5.8e-51 Smith-Waterman score: 714; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114) 10 20 30 40 50 60 pF1KE5 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG 70 80 90 100 110 >>CCDS1273.1 XCL2 gene_id:6846|Hs108|chr1 (114 aa) initn: 702 init1: 702 opt: 702 Z-score: 1011.4 bits: 192.4 E(32554): 5.1e-50 Smith-Waterman score: 702; 98.2% identity (99.1% similar) in 114 aa overlap (1-114:1-114) 10 20 30 40 50 60 pF1KE5 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF ::::::::::::::::::::::::::: .::::::::::::::::::::::::::::::: CCDS12 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG 70 80 90 100 110 114 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:21:10 2016 done: Mon Nov 7 22:21:10 2016 Total Scan time: 1.490 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]