FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5137, 146 aa
  1>>>pF1KE5137 146 - 146 aa - 146 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4315+/-0.000312; mu= 16.3491+/- 0.019
 mean_var=55.9447+/-11.403, 0's: 0 Z-trim(116.4): 15  B-trim: 626 in 1/50
 Lambda= 0.171473
 statistics sampled from 27545 (27560) to 27545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.323), width:  16
 Scan time:  4.390

The best scores are:                                      opt bits E(85289)
NP_001776 (OMIM: 123920) cytidine deaminase [Homo  ( 146) 1012 257.7 4.9e-69


>>NP_001776 (OMIM: 123920) cytidine deaminase [Homo sapi  (146 aa)
 initn: 1012 init1: 1012 opt: 1012  Z-score: 1360.4  bits: 257.7 E(85289): 4.9e-69
Smith-Waterman score: 1012; 99.3% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KE5 MAQKRPACTLKPECVQQLLVCSQEAKQSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
NP_001 MAQKRPACTLKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKP
               70        80        90       100       110       120

              130       140      
pF1KE5 DGTYIVMTVQELLPSSFGPEDLQKTQ
       ::::::::::::::::::::::::::
NP_001 DGTYIVMTVQELLPSSFGPEDLQKTQ
              130       140      




146 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:43:36 2016 done: Mon Nov  7 21:43:36 2016
 Total Scan time:  4.390 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]